Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq8 149 2e-30 >seq8 Length=6382 Score = 149 bits (164), Expect = 2e-30 Identities = 426/651 (65%), Gaps = 8/651 (1%) Strand=Plus/Minus Query 363382 TATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGAT 363441 |||||| ||| |||| || || | || | ||| || ||| || || || | | Sbjct 5017 TATGATTATTTTGGATTCAAAACATTAGAAAGATCATATTTATTACGAATTAACAATAAA 4958 Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 ||| ||||||| || || ||| | |||||| | || | ||||| || ||| ||| Sbjct 4957 ATTATTGAACGTCCACAACATTTATTAATGAGAGTATCAATTGGAATACATATAGATGAT 4898 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTAT---TCACGCACGCC 363558 |||| || | ||||||||| | | ||| ||| || |||| || || Sbjct 4897 CTTGAAAAAGCTTTAGAAACATATCA---TTTAATGTCTCAGAAATATTTCACACATGCT 4841 Query 363559 ACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTA 363618 || || ||| | | ||| | ||||| | |||||| ||||| ||||||||||| || Sbjct 4840 ACTCCTACATTATTTAATTCAGGAACACCACGTCCACAAATGTCATCTTGCTTTCTATTA 4781 Query 363619 AAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATT 363678 ||||| ||||| ||||| ||||| ||||| ||| | || | |||||| | ||| Sbjct 4780 TCTATGAAATCAGATTCTATCGAAGGTATATTTGAAACATTAAAACAATGTGCTTTAATT 4721 Query 363679 TCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTAC 363738 || | || || || || || || | | || || | | | |||||| ||| Sbjct 4720 AGTAAAACCGCGGGAGGTATAGGAGTTGCTGTACAAGATATAAGAGGACAGAATTCTTAT 4661 Query 363739 ATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAA 363797 ||| | || || | || ||| || ||||| | ||||| ||| | | || ||| | | Sbjct 4660 ATTAGAGGAACTAATGGTATA-TCAAATGGTTTAGTTCCAATGTTAAGAGTTTTTAATGA 4602 Query 363798 TACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCT 363857 ||| || || || || || || ||||||||||| | ||||| | |||||| | ||| | Sbjct 4601 TACAGCTAGATATGTAGATCAAGGTGGAGGAAAAAGAAAAGGTTCTTTTGCTGTATATAT 4542 Query 363858 CGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGA 363917 || || ||| | ||||||||||| ||| | || | | ||||| || ||||| Sbjct 4541 AGAACCATGGCATTCTGATATTTTTGAATTTTTAGATTTAAGAAAAAATCATGGTAAAGA 4482 Query 363918 GGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCG 363977 ||||| | || | ||| | || ||||| ||||||| |||| |||||||| | Sbjct 4481 AGAATTAAGAGCTAGAGATTTATTTTATGCTATTTGGGTACCTGATTTATTTATGAAAAG 4422 Query 363978 CGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGG 364028 || | | | || |||||| |||| | || || | ||||||||||| Sbjct 4421 AGTAAAAGAAAATAGAAATTGGACACTAATGTGTCCTAATGAATGTCCAGG 4371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303258631547234