Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq214 134 1e-26 seq5639 111 1e-19 seq8 109 5e-19 >seq214 Length=8422 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | |||||||||||||||||||||||| | || || | || || || | | Sbjct 6925 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 6866 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| || ||| || |||||||| || ||||| |||||| Sbjct 6865 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATCCCTCCTGATCAA 6806 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| | |||| | || || ||| | ||||||| |||| | |||||||| Sbjct 6805 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAAT 6746 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||||||| || | |||||||| |||||||| |||||||| Sbjct 6745 ATTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGG 6699 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||||||||||||||||||||| | || || | || || || | | Sbjct 6697 ATGCAGATTTTTGTAAAAACATTAACTGGAAAGACTATAACTCTTGATGTAGAACCATCC 6638 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| || ||| || |||||||| || ||||| || ||| Sbjct 6637 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATTCCTCCTGACCAA 6578 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| | |||| | || || ||| | ||||||| |||| | || |||||| Sbjct 6577 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGACTATAAC 6518 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||||||| || | ||| |||| |||||||| |||||||| Sbjct 6517 ATTCAAAAAGAATCAACCTTACATCTAGTTTTAAGATTAAGAGGAGG 6471 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | |||||||||||||||||||||||| | || || | || || || | | Sbjct 7153 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 7094 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| || || || ||||| || || ||||| || ||| Sbjct 7093 GATACTATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAGGGAATTCCTCCTGACCAA 7034 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| | |||| | || || ||| | ||||||| |||| | |||||||| Sbjct 7033 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAAT 6974 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||||||| || | |||||||| |||||||| |||||||| Sbjct 6973 ATTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGG 6927 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 24018 GGAAAATCGATTACCATCGAAGTCGAGGCCAAC-GACACCATCGAGCAAGTCAAACAAAA 24076 |||||| | || || | || || ||| ||| | || || || || | || ||| || Sbjct 7354 GGAAAAACTATAACTCTTGATGTAGAG-CCATCTGATACTATTGAAAATGTTAAAGCTAA 7296 Query 24077 GATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCA 24136 ||| || |||||||| || ||||| |||||||| ||| | |||| | || || || Sbjct 7295 AATTCAAGATAAAGAAGGAATTCCTCCTGATCAACAAAGATTAATTTTTGCTGGGAAACA 7236 Query 24137 ACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTT 24196 | | ||||||| |||| | |||||||| |||||||||||||| || | ||||| Sbjct 7235 ATTAGAAGATGGTAGAACACTATCTGATTATAATATTCAAAAAGAATCAACTTTACATTT 7176 Query 24197 AGTGTTAAGATTGAGAGGAGG 24217 ||| |||||||| |||||||| Sbjct 7175 AGTTTTAAGATTAAGAGGAGG 7155 >seq5639 Length=3794 Score = 111 bits (122), Expect = 1e-19 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 ||||||||| | ||||||||||||||||| |||||| | || || | || || || || Sbjct 1053 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAA-CC 995 Query 24048 AAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | | ||||| || || | || ||| || ||| || |||||||| || ||||| || Sbjct 994 ATCTGACACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATTCCTCCTGA 935 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATT 24165 |||||| ||| | |||| | || || || | ||||||| ||||| | | | | || | Sbjct 934 TCAACAAAGATTAATTTTTGCTGGAAAACAGTTAGAAGATGGCAGAA-CATTATCTGACT 876 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||| ||||||||||| || || | ||||| || Sbjct 875 ATAATATTCAAAAAGAGTCAACCTTACATTTGGT 842 >seq8 Length=6382 Score = 109 bits (120), Expect = 5e-19 Identities = 185/265 (70%), Gaps = 5/265 (2%) Strand=Plus/Plus Query 133013 TATAATCGCTCAAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAGGACAC 133072 |||||| ||||||||||| || | | || | || || ||||| || | ||||||| Sbjct 4332 TATAATTTTTCAAATTCTTCACCCCAAGATTCACTTAACCCTGGACATTCATTAGGACAC 4391 Query 133073 ATCAATGACCATTTTTCTCCTGCGCTCACCCTTTTCATGAACAACGAAGGTGTCCACATG 133132 || | || ||| ||| | | | || |||||||| || || |||| ||| || Sbjct 4392 ATTAGTGTCCAATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATA 4451 Query 133133 GCAAAAAATAAATCGCGAGC-CTTCATATCTTCCGCGCCCATATTTCGTTTCAAGTCCaa 133191 ||| |||||||||| | ||| ||| || ||||| || |||| | | || || || Sbjct 4452 GCATAAAATAAATCTCTAGCTCTTAAT-TCTTCTTTACCATGATTTTTTCTTAAATCTAA 4510 Query 133192 aaaagtaaaaaTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCCTTTCCTTTT 133251 ||| |||||| || | |||||| || || |||||||| || |||| ||||| ||||| Sbjct 4511 AAATTCAAAAATATCAGAATGCCATGGTTCTATATATACAGCAAAAGAACCTTTTCTTTT 4570 Query 133252 ACCT---CCCTGATCCACATGTCTA 133273 ||| || ||||| |||| |||| Sbjct 4571 TCCTCCACCTTGATCTACATATCTA 4595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429906201001485