Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq214 87.8 2e-12 >seq214 Length=8422 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCTCATGGTGCGCGAGTCCTC 131084 |||||||||| || || || |||||||| || ||||| | | || | | | || || Sbjct 6717 ACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCA-TCTTC 6775 Query 131085 TAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGT 131144 || || || || || | ||||| | || || || ||||||||||||||||| || | Sbjct 6776 TAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTATC-TT 6834 Query 131145 GATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTT 131203 || ||| |||| | | | || | |||||||| | || | || | || | ||||| Sbjct 6835 GAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTTT 6894 Query 131204 TACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || |||| |||||||| ||||||||||| Sbjct 6895 TTCCAGTTAATGTTTTTACAAAAATCTGCAT 6925 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCTCATGGTGCGCGAGTCCTC 131084 |||||||||| || || || |||||||| || ||||| | | || | | | || || Sbjct 6945 ACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCA-TCTTC 7003 Query 131085 TAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGT 131144 || || || || || | ||||| | || ||||| ||||| ||||| ||||| || Sbjct 7004 TAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCCTCTTTATCTTG 7063 Query 131145 GATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTT 131203 |||||| |||| | | | || | |||||||| | || | || | || | ||||| Sbjct 7064 GATTTTA-GCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTTT 7122 Query 131204 TACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || |||| |||||||| ||||||||||| Sbjct 7123 TTCCAGTTAATGTTTTTACAAAAATCTGCAT 7153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471979245790080