Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1378 127 1e-24 seq479 127 1e-24 seq214 98.7 7e-16 seq4355 96.9 2e-15 seq5639 86.0 4e-12 >seq1378 Length=8298 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| | ||||| || |||||||| Sbjct 4834 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAAGTAGGGACAGTGGGAATCTCGT 4893 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 4894 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 4928 >seq479 Length=15070 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| | ||||| || |||||||| Sbjct 8598 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAAGTAGGGACAGTGGGAATCTCGT 8657 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 8658 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 8692 >seq214 Length=8422 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||||| || | || || ||||| | ||| || ||||||||||| ||||||| Sbjct 6697 TACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAG 6756 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | | || ||||||||||| || ||||| |||| | ||||||||| | | Sbjct 6757 ATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAG 6816 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||| || |||||| || ||||| | | |||||| ||| | Sbjct 6817 GGATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTA 6876 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || ||||| || || || ||||| || || |||||||| Sbjct 6877 CATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 6925 >seq4355 Length=13479 Score = 96.9 bits (106), Expect = 2e-15 Identities = 79/95 (83%), Gaps = 7/95 (7%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||| ||||||||||||||||||||||||| | | ||||| | |||||||| Sbjct 1928 AAGCCCGATCCCTTGGCTGTGGTTTCGCTAGATCGCAAGTAGGGACAGTGAGAATCTCGT 1987 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| ||||||||||| ||||||| Sbjct 1988 TAATCCATTCATGCACGTCACTAATT--ATGACGA 2020 >seq5639 Length=3794 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||| | || ||| ||||||||||| || ||||| || | | || ||| Sbjct 842 ACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTCT 901 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 || |||||||| ||||| |||| | ||||||||| | || | |||||||| || | Sbjct 902 AACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGA 961 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| || ||||| | | ||| || |||||| || | || || ||||| Sbjct 962 ATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTTT 1021 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || ||||| || || || ||||| || Sbjct 1022 CCGGTTAATGTTTTTACAAAGATTTGCATTTT 1053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334923984704897