Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq214 136 3e-27 seq5639 123 2e-23 >seq214 Length=8422 Score = 136 bits (150), Expect = 3e-27 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| || || || || ||| |||| || | || || || | || Sbjct 6925 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 6866 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || | || |||| |||| ||| || |||||||| || || ||||| Sbjct 6865 GATACTATTGAA--AATGTTAAAGCTAAAATTCAA-GATAAAGAAGGAATCCCTCCTGAT 6809 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | |||||||| || |||||||||||||||| | | || | ||||| Sbjct 6808 CAACAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTAT 6749 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||||||||| || |||||||||| |||| |||||||||| Sbjct 6748 AATATTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGG 6699 Score = 136 bits (150), Expect = 3e-27 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| || || || || ||| |||| || | || || || | || Sbjct 7153 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 7094 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || | || |||| |||| || || ||||| || ||||| |||||| Sbjct 7093 GATACTATTGAA--AATGTTAAAGCTAAAATCCAA-GATAAAGAGGGAATTCCTCCTGAC 7037 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | |||||||| || |||||||||||||||| | | || | ||||| Sbjct 7036 CAACAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTAT 6977 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||||||||| || |||||||||| |||| |||||||||| Sbjct 6976 AATATTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGG 6927 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| || || || || || | || || | || || || | || Sbjct 6697 ATGCAGATTTTTGTAAAAACATTAACTGGAAAGACTATAACTCTTGATGTAGAACCATCC 6638 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || | || |||| |||| ||| || |||||||| ||||| |||||| Sbjct 6637 GATACTATTGAA--AATGTTAAAGCTAAAATTCAA-GATAAAGAAGGAATTCCTCCTGAC 6581 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | |||||||| || |||||||||||||||| | | || | || || Sbjct 6580 CAACAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGACTAT 6521 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||||||||| || ||||| |||| |||| |||||||||| Sbjct 6520 AACATTCAAAAAGAATCAACCTTACATCTAGTTTTAAGATTAAGAGGAGG 6471 Score = 123 bits (136), Expect = 2e-23 Identities = 151/203 (74%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 25026 GGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG---AAGCAA 25082 || ||| | || || | || || ||| | ||||| ||||| || | || |||| | Sbjct 7354 GGAAAAACTATAACTCTTGATGTAGAGCCATCTGATACTATTGAA--AATGTTAAAGCTA 7297 Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142 ||| ||| || |||||||| ||||| ||||| ||||| | | |||||||| || ||| Sbjct 7296 AAATTCAA-GATAAAGAAGGAATTCCTCCTGATCAACAAAGATTAATTTTTGCTGGGAAA 7238 Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202 ||||||||||||| | | || | ||||| ||||||||||||||||| || ||||| Sbjct 7237 CAATTAGAAGATGGTAGAACACTATCTGATTATAATATTCAAAAAGAATCAACTTTACAT 7178 Query 25203 TTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| |||| |||||||||| Sbjct 7177 TTAGTTTTAAGATTAAGAGGAGG 7155 >seq5639 Length=3794 Score = 123 bits (136), Expect = 2e-23 Identities = 157/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| |||||||| || || ||||| ||| | ||||| | || || || | || Sbjct 1051 AATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATC 992 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||| || | || |||| |||| ||| || |||||||| ||||| ||||| Sbjct 991 TGACACTATTGAA--AATGTTAAAGCTAAAATTCAA-GATAAAGAAGGAATTCCTCCTGA 935 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| | | |||||||| || ||||| |||||||||| | || | || || Sbjct 934 TCAACAAAGATTAATTTTTGCTGGAAAACAGTTAGAAGATGGCAGAACATTATCTGACTA 875 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||||||||||||| || || ||||||| || Sbjct 874 TAATATTCAAAAAGAGTCAACCTTACATTTGGT 842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433297965900905