Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_008717.1 Length=36415 Score E Sequences producing significant alignments: (Bits) Value seq2106 156 1e-33 >seq2106 Length=2500 Score = 156 bits (172), Expect = 1e-33 Identities = 343/505 (68%), Gaps = 9/505 (2%) Strand=Plus/Plus Query 16591 GCCGCTATCGAGTATCTGGAGCGCAAGGGCTTCGCGATCACTTGGAACTGGCATGACGTT 16650 ||||| |||| || || ||| |||||||| | | | || ||||||||||| || | | Sbjct 1710 GCCGCGATCGCCTACCTCCAGCACAAGGGCTACAAGCTTACCTGGAACTGGCAGGA-GAT 1768 Query 16651 GACGCGGCCA--CCCACGCCCGCGCTCTGACCGTTGCCAGAGCAGCACGCCTGGACGTGC 16708 | | | | | ||||||| || || | ||| |||| | | || || ||| ||||| Sbjct 1769 GCTG-GACGATGCCCACGCACGGGCCTTTACCATTGCGAAGSCGGCGCGGCTG-ACGTGG 1826 Query 16709 TCCAGGACATTCGCGACGCCCTGGTCGAGAACCTGGAGCGCGGCGAGACGCTACGAGATT 16768 | ||||||||||| | ||||| | || || | |||| | ||||| || | Sbjct 1827 TGCAGGACATTCGGAATGCCCTYGACGTCGCGCTCCGCCACGGCCAAACGCTCAAGGACT 1886 Query 16769 TCAAGCGCAACCTGCGGCCGACCCTGGAGGCGAAGGGCTGGTGGGGTCGCCAGGTGGTAG 16828 || | ||| || ||| || ||| | || |||||||||||||| ||| | | | Sbjct 1887 TCCAAAAAAACTTGAAGCCCACGCTGCAAGCCAAGGGCTGGTGGGGCAAACAGATCATCG 1946 Query 16829 TCG-CGCCGGATGGCGGCGCCGAGGTCGCACAACTGGGCAGCCCGCGCCGCCTGGATACC 16887 | | || || || |||||||||| | ||||||||||| | || |||| ||| Sbjct 1947 TTGACGGCGCCGGGAWTS-CCGAGGTCGCCCSGCTGGGCAGCCCATGGCGGCTGGCTACR 2005 Query 16888 ATCTACCAGACCAACATGCAGGCGGCCTACATGGCAGGGCGCTACGCGGCCGCCTACGAA 16947 ||||||| ||| ||| |||| | |||| |||||| | | ||| | |||| Sbjct 2006 ATCTACCGGACGAACCTGCAATCCGCCTTCATGGCGGCGAATTACCAAGAAATGGCCGAA 2065 Query 16948 GCCAGGGAAACCCACCCTTACTGGATGTATGTGGCGGTGATGGATGGCGTTACCCGGCCC 17007 |||| ||| | |||||| || ||| || || |||||| |||| ||| ||||||||| Sbjct 2066 GCCACGGACAGCCACCCCTATTGGCAATACGTCGCGGTGCTGGACGGCCGCACCCGGCCC 2125 Query 17008 AGCCATGCCGCCCTGCATGGGAAAGTGTTCAGGTGGGACGATCCGATCTGGCAGCAC-AT 17066 ||||| ||| || | || ||||||| | |||||||| |||||| | ||| || Sbjct 2126 AGCCACCGGGCCATGAACGGCCGAGTGTTCCGCCATGACGATCCCATCTGG-AACACGAT 2184 Query 17067 CACCCCGCCCAATGGCTACAACTGC 17091 | ||||||||||||| ||||||| Sbjct 2185 CTGGCCGCCCAATGGCTTCAACTGC 2209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116398538712038