Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_009237.1 Length=37446 Score E Sequences producing significant alignments: (Bits) Value seq4235 210 5e-50 seq2106 183 7e-42 >seq4235 Length=1163 Score = 210 bits (232), Expect = 5e-50 Identities = 316/445 (71%), Gaps = 8/445 (2%) Strand=Plus/Plus Query 9449 CCGATCGGCACGACGCTCGCGCAGGCGCTGGCCGGGCGCGGCCCGGCGGGCACGATCAAC 9508 ||||||||||| ||| | ||||||||| | ||||||||||| || ||| | |||||| Sbjct 1 CCGATCGGCACCACGGTGCAGCAGGCGCTAACGGGGCGCGGCCCCGCCGGCGCCATCAAC 60 Query 9509 TTCAACACGTCCAGC---GACCGCGTACGCCTCTGCTACCCGCACGTGAAGGTCTATGAC 9565 ||||| | |||| ||||| | |||| ||||| ||||| ||||||| || ||| Sbjct 61 TTCAAT---TACAGCTCGGACCGGCTGGGCCTGTGCTATCCGCATCTGAAGGTGTACGAC 117 Query 9566 ATCGCGACCAACGCAGAGCGCCTGGAGCCGCTCTCGTCGCGCGCAGCGGGCCTTCGCGCA 9625 | ||| || ||| || |||||||||| | ||| ||||| ||||| ||| Sbjct 118 AGCGCCTCCGGCGCCGAAATCCTGGAGCCGATGTCGCCGCGCCTGGCGGGGAGGATCGC- 176 Query 9626 CGCGTC-GACCTGGACAAGGGCTACTGGTGGTCCAGCTCGAATCAGCAGCTCGTCGGCGT 9684 |||| | |||| ||||||||| ||||||||| ||||| ||| || || || | Sbjct 177 CGCGACCGACCAGGACAAGGGTTACTGGTGGAGTGCGTCGAACCAGGAGATCAAGGGGAT 236 Query 9685 CACGGGCGTCGAACGACCGCTGTCGGCGATGATCGACGATCCGCAATCGGACGTGAACAT 9744 | ||| |||| | ||| || ||||||||||| |||||||| ||||| || | Sbjct 237 CGTCGGCCTCGAGCTGCCGTTGACGGCGATGATCAACGATCCGGCCTCGGAAACCAATCT 296 Query 9745 GCTCAACGAACAGGGCATCACGACCGTCTTCAGCTCGTACGGCTCGGGCCTGCGCCTGTG 9804 ||| ||||| ||||||| || || |||| | ||| ||| ||||| | ||| || Sbjct 297 GCTGAACGAGGCCGGCATCATCACGGTGTTCAACGCGTTCGGATCGGGGATCCGCACCTG 356 Query 9805 GGGCAACCGCACGGCGGCATGGCCGACTGTCACGCACATGCGGAACTTCGAGAACGTGCG 9864 |||||||||| |||| || |||||| | |||||| ||| |||||| ||| | || Sbjct 357 GGGCAACCGCTCGGCAGCCTGGCCGTCGAACACGCATCCGCGCAACTTCATCAACATCCG 416 Query 9865 TCGTACCGGCGACGTCATCAACGAA 9889 || |||| |||||| ||| ||||| Sbjct 417 CCGCACCGCCGACGTGATCCACGAA 441 >seq2106 Length=2500 Score = 183 bits (202), Expect = 7e-42 Identities = 337/481 (70%), Gaps = 20/481 (4%) Strand=Plus/Plus Query 3582 CAAGGGCTACGAGATCACCTGGGATTGGGAGGAGCTTTGGCAGGACGCCCAGGCGAAGGC 3641 |||||||||| || | |||||| | ||| ||||| | | | || ||||| || ||| Sbjct 1733 CAAGGGCTACAAGCTTACCTGGAACTGGCAGGAGATGCTGGACGATGCCCACGCACGGGC 1792 Query 3642 GTTCACGGTCGCCAAGGTCACGCGCCTGGACATCCTGCAGGACATTCGCAACGCGGTCGA 3701 || || | || ||| |||| ||| || | ||||||||||||| || || | || Sbjct 1793 CTTTACCATTGCGAAGSCGGCGCGGCTG-ACGTGGTGCAGGACATTCGGAATGCCCTYGA 1851 Query 3702 AACCGCAATCAGCGAAGGCAAGACGCTGCGATGGTTCACGAAGGAGCT-GACGCCTGTCC 3760 ||| || || | ||| | ||||| | | | | | || | || || ||| | Sbjct 1852 CGTCGCGCTCCGCCACGGCCAAACGCT-CAAGGACTTCCAAAAAAACTTGAAGCCCACGC 1910 Query 3761 TGCAATCCAAGGGCTGGTGGGGAAAGCAGGAACA-CGTCGACCAGGGCACCGGCGAGATC 3819 ||||| |||||||||||||||| || ||| | || ||| ||| ||| |||| || Sbjct 1911 TGCAAGCCAAGGGCTGGTGGGGCAAACAG-ATCATCGTTGAC---GGCGCCGG---GAWT 1963 Query 3820 ACCCAGGTT---CAGCTCGGCAGCCCGTGGCGCCTGCAGACCATCTACCGGACGAACCTG 3876 || |||| | ||| |||||||| ||||| ||| || |||||||||||||||||| Sbjct 1964 SCCGAGGTCGCCCSGCTGGGCAGCCCATGGCGGCTGGCTACRATCTACCGGACGAACCTG 2023 Query 3877 CAAACCGCCTACATGGCGGGCCGCTATGCCGAGCAAATGG-CGAA-CGTCGG-CGATCGG 3933 ||| |||||| |||||||| || | || || |||||| |||| | ||| | | Sbjct 2024 CAATCCGCCTTCATGGCGG--CGAATTACCAAG-AAATGGCCGAAGCCACGGACAGCCAC 2080 Query 3934 CCGTACTGGATGTACGTGGCGATCCTCGACAGCCGCACGCGCCCGAGCCATCGGGCAATG 3993 || || ||| ||||| ||| | || ||| ||||||| || || ||||| ||||| ||| Sbjct 2081 CCCTATTGGCAATACGTCGCGGTGCTGGACGGCCGCACCCGGCCCAGCCACCGGGCCATG 2140 Query 3994 AACGGCAAGGTGTTCCGCTACGACGATCCGTTCTGGCAGTCGTTCTACCCGCCGAACGGC 4053 |||||| ||||||||| | |||||||| ||||| | || ||| ||||| || ||| Sbjct 2141 AACGGCCGAGTGTTCCGCCATGACGATCCCATCTGGAACACGATCTGGCCGCCCAATGGC 2200 Query 4054 T 4054 | Sbjct 2201 T 2201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119697515906752