Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq214 122 2e-22 seq5639 107 5e-18 >seq214 Length=8422 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| |||||||| || | || || | || |||||||||||||| || || || Sbjct 6734 TTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAA 6793 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | |||||| | ||||||||||||||||| || ||||| ||||| || || Sbjct 6794 AATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTATCTTGAATTTTAGCTTTAACATT 6853 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| |||| | |||||| || || || || || || || || | || || || Sbjct 6854 TTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTAC 6913 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 6914 AAAAATCTGCAT 6925 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || |||||||| | || || | || |||||||||||||| || || || Sbjct 6506 TTCTTTTTGAATGTTATAGTCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAA 6565 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | ||||| | || |||||||||||||| || ||||| ||||| || || Sbjct 6566 AATTAATCTTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGAATTTTAGCTTTAACATT 6625 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| |||| | |||||| || || || || ||||| || || | || || || Sbjct 6626 TTCAATAGTATCGGATGGTTCTACATCAAGAGTTATAGTCTTTCCAGTTAATGTTTTTAC 6685 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 6686 AAAAATCTGCAT 6697 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| |||||||| || | || || | || |||||||||||||| || || || Sbjct 6962 TTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAA 7021 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | ||||| | || ||||| |||||||| |||||||| ||||| || || Sbjct 7022 AATTAATCTTTGTTGGTCAGGAGGAATTCCCTCTTTATCTTGGATTTTAGCTTTAACATT 7081 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| |||| | |||||| || || || || || || || || | || || || Sbjct 7082 TTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTAC 7141 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 7142 AAAAATCTGCAT 7153 Score = 95.1 bits (104), Expect = 3e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| |||||||| || | || || | || |||||||||||||| || || || Sbjct 7190 TTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAA 7249 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | |||||| | || |||||||||||||| || ||||| ||||| || || Sbjct 7250 AATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTAGCTTTAACATT 7309 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCC 288446 ||| |||| ||| | ||||| || || || || || || || Sbjct 7310 TTCAATAGTATCAGATGGCTCTACATCAAGAGTTATAGTTTTTCC 7354 >seq5639 Length=3794 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| ||||||||||| | | || | || |||||||| |||||||| || || Sbjct 860 TCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTCTAACTGTTTTCCAGCAAAA 919 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | | |||||| | || |||||||||||||| || ||||| ||||| || ||| Sbjct 920 ATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTT 979 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || | ||| || || || ||||| || || ||||| | || || || Sbjct 980 TCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTTTTTACA 1039 Query 288463 AATATCTGCATT 288474 || || |||||| Sbjct 1040 AAGATTTGCATT 1051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179568444850786