Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq214 109 5e-19 seq5639 91.5 1e-13 >seq214 Length=8422 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||||||| | || ||||||||||||||||| || || | | || | Sbjct 6480 AATCTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAGTGTTCTA 6539 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || || ||| |||| | | || ||||| ||||||||||||||| Sbjct 6540 CCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCTTCT 6599 Query 64346 TTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGT 64404 || ||||| | |||| ||||| ||| || | ||||| | || || || | ||| Sbjct 6600 TTATCTTG-AATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGT 6658 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| || || || |||||||| ||||| ||||| Sbjct 6659 TATAGTCTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 6697 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| ||| | || |||||||||||||| || ||||| | | || | Sbjct 6936 AATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTA 6995 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || || ||| |||| | | || ||||| ||||||||||| ||| Sbjct 6996 CCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCCTCT 7055 Query 64346 TTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGT 64404 || ||||| | |||| ||||| ||| || | ||||| | || || || | ||| Sbjct 7056 TTATCTTGGA-TTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGT 7114 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||| || || || || |||||||| ||||| ||||| Sbjct 7115 TATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 7153 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| ||| | || |||||||||||||| || ||||| | | || | Sbjct 6708 AATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTA 6767 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || || ||| |||| | | || || || ||||| ||||||||| Sbjct 6768 CCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGGATTCCTTCT 6827 Query 64346 TTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGT 64404 || ||||| | |||| ||||| ||| || | ||||| | || || || | ||| Sbjct 6828 TTATCTTG-AATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGT 6886 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||| || || || || |||||||| ||||| ||||| Sbjct 6887 TATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 6925 >seq5639 Length=3794 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||||||||| || || || | | || | | ||||| | ||| || || Sbjct 854 GTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTCTAACTGTTTTCCA 913 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| | | || || || ||||||||||||||||| ||||| | |||| ||||| Sbjct 914 GCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTG-AATTTTAGCTTT 972 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | || ||| | || || || | ||| | || || ||||| || || Sbjct 973 AACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGT 1032 Query 64426 TTTTACGAAAATTTGCATTTTAATAATGATACACTTAAT 64464 |||||| || ||||||||||| ||| ||| | |||| Sbjct 1033 TTTTACAAAGATTTGCATTTTCGTAAGTATAAAAATAAT 1071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499609281500280