Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq4231 273 1e-68 >seq4231 Length=1411 Score = 273 bits (302), Expect = 1e-68 Identities = 480/693 (69%), Gaps = 12/693 (2%) Strand=Plus/Plus Query 65913 ATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGC 65972 |||||||||||||| | || |||||| ||| || ||| ||| || | ||| | || Sbjct 726 ATTCCCACCGGCTCCCTGGCGCTGGACATCGCGCTGGGCTGCGGCGGTTTGCCGCGTGGT 785 Query 65973 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 66032 || | || ||||| ||||| || ||||| || || ||| | ||| || || | | Sbjct 786 CGCATCGTCGAGATTTACGGGCCGGAGTCCTCGGGCAAGACGACGCTGACTCTGGAGGTC 845 Query 66033 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTC 66092 | ||| | || |||||| |||| ||| || || | | | || ||||| ||| | || Sbjct 846 ATCGCCCAGGCGCAGAAGACCGGCGGCGTGGCGGCTTTCGTGGATGCCGAGCATGCCCTG 905 Query 66093 GACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCA 66152 ||||| | || |||| | | |||| ||| | ||||| |||| |||| ||||| Sbjct 906 GACCCGGTCTATGCCGAGAAGATCGGAGTGAACCTCGACGATCTGCTGGTGTCCCAGCCG 965 Query 66153 GACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCC 66212 || || ||||||||||| ||||| |||| ||| | || || || |||| || | Sbjct 966 GATACCGGCGAGCAGGCGCTGGAAATCGCGGACGTGCTGGTGCGTTCCGGCGGCGTGGAC 1025 Query 66213 ATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATC 66272 || | || | ||||| |||||||| ||| ||| ||| || |||||||| || || Sbjct 1026 GTCGTGGTGATCGACTCGGTGGCGGCGCTGACGCCCAAGGCCGAACTCGAAGGCGAGATG 1085 Query 66273 GGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACC 66332 || || |||||| | || ||||| ||| | |||||||| |||||| |||||||||||||| Sbjct 1086 GGCGATTCGCACATGGGTCTGCAGGCCAGACTGATGTCGCAGGCCTTGCGCAAGCTGACC 1145 Query 66333 GGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATC 66392 | || || || ||||||| || | | | |||||| | ||| ||||||| Sbjct 1146 GCCAACATCAAGCGCTCCAACACCCTGGTGATCTTCATCAATCAGATCCGCATGAAGATC 1205 Query 66393 GGCAACGTGGGCTACGGC---CCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTC 66449 || |||| | |||| ||| |||||||||||||| ||||| || || ||| Sbjct 1206 GG---CGTGATGTTCGGCAATCCG---GAGACCACCACCGGCGGTAACGCGCTCAAGTTC 1259 Query 66450 TACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGA-GAAGGAAGGCGATGAGGC 66508 |||||||||||||| |||| ||||| | ||| ||| ||| | ||||| |||| Sbjct 1260 TACGCCTCGGTGCGGCTGGACATCCGC-CGTTCGGGGGCGATCAAGAACGGCGACGAGGT 1318 Query 66509 TGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCA 66568 |||| ||| || ||||| ||||| || ||||||||| |||| || ||| |||| Sbjct 1319 GATCGGGAACGAAACCCGCGTCAAGGTCGTGAAGAACAAGGTGGCTCCGCCGTTCCGCAC 1378 Query 66569 GGCTGAGTTTTCCATCGTCTACGGCGAGGGCAT 66601 || || || || |||| ||||||||||| Sbjct 1379 CGCCGACTTCGAGATTCTCTA-GGCGAGGGCAT 1410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242453594300804