Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq214 98.7 1e-15 >seq214 Length=8422 Score = 98.7 bits (108), Expect = 1e-15 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 138384 GCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC 138443 ||| || |||| || | ||||||| ||||| | |||| || ||||||||||| ||||| Sbjct 6467 GCAACCTCCTCTTAATCTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTC 6526 Query 138444 GCTCATAGTACGCGAG--TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCC 138501 ||||| | | || || | |||||| || | | | |||| | |||||||| Sbjct 6527 AG--ATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCA 6584 Query 138502 GGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGA 138560 ||||| || |||||||| || ||| |||| | ||||| | ||| | || |||| | Sbjct 6585 GGAGGAATTCCTTCTTTATCT-TGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGG 6643 Query 138561 CTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || | || | || || ||||| | |||||||||||||||||||| Sbjct 6644 TTCTACATCAAGAGTTATAGTCTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 6697 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 138403 AAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG--T 138460 ||||||||||||| |||| || |||||||| || || || ||||| | | | Sbjct 6714 AAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAG--ATAGTGTTCTACCAT 6771 Query 138461 CCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGT 138520 | || | |||||| || | | | |||| | ||||| || ||||| || |||||||| | Sbjct 6772 CTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTAT 6831 Query 138521 CGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 | ||| |||| | ||||| | ||| | || |||| | || || || | || | Sbjct 6832 CT-TGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATG 6890 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| ||||| | |||||||||||||||||||| Sbjct 6891 GTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 6925 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 138403 AAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG--T 138460 ||||||||||||| |||| || |||||||| || || || ||||| | | | Sbjct 6942 AAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAG--ATAGTGTTCTACCAT 6999 Query 138461 CCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGT 138520 | || | |||||| || | | | |||| | |||||||| ||||| || || ||||| | Sbjct 7000 CTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCCTCTTTAT 7059 Query 138521 CGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCG 138580 | |||||| ||| | | ||| | || |||| | || || || | || | | Sbjct 7060 CTTGGATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGG 7119 Query 138581 TTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||||| | |||||||||||||||||||| Sbjct 7120 TTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 7153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496227121946640