Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_011589.1 Length=40287 Score E Sequences producing significant alignments: (Bits) Value seq4160 170 5e-38 >seq4160 Length=838 Score = 170 bits (188), Expect = 5e-38 Identities = 550/837 (66%), Gaps = 48/837 (6%) Strand=Plus/Plus Query 28930 CGCATCTTCATCTTGCTGGCAGGGATGGTCCACACGGCCGCGTCGAGGTCGAACTCCTCC 28989 ||||||||||| ||| ||| || ||| |||| ||||||| |||| ||||| |||| || Sbjct 14 CGCATCTTCATTTTGGCGGCCGGTATGCGCCACTCGGCCGCCTCGATGTCGATCTCCGCC 73 Query 28990 CATTCCGCATGCCGCAGTTCGCCAGGACGCAGGAACACCAGCGGCGCCAGCCGCA--GCG 29047 || || || ||||| | ||||| || ||||| | |||||||||| || || ||| Sbjct 74 CACTCGGCTTGCCGGACCTCGCCCGGGCGCAGCATGACCAGCGGCGAGAGTTTCAAGGCG 133 Query 29048 CCGCGCGT-GTGATG-GCAGATCCGCTGTATGCCTCGATGGAGCGCAGCAGGCCACCCA- 29104 | |||| | || | || || | ||| ||||||||| |||||||| | || | Sbjct 134 CATTGCGTGGCGAAGTGC----CCTGTATATTCCTCGATGGCCCGCAGCAGCTCGCCGAT 189 Query 29105 -GCTGCACGGGGTCAGTAATCGCCGCATGGTGGGCCT--CCTTAGGCGGCGCGAGCGCTC 29161 ||| |||||| || |||||||| | | |||| | || ||| || || | Sbjct 190 GGCT--TTGGGGTCGGTGATCGCCGC--GAAGTGCCTGGCTTTCACCGGTTGTAGGGCGC 245 Query 29162 CTTTCAGGTCGGCAACCGGGTTTCGCTCGGCGCGGCCAGTGGCCACGGCGTAGCGCATGA 29221 ||||||| ||||| |||||| || ||||| | || || || | |||||||||||| | Sbjct 246 CTTTCAGATCGGCGGCCGGGTCGCGTTCGGCCCTACCGGTAGCGATGGCGTAGCGCATCA 305 Query 29222 TCTGGCCGCAG-TTC--TGCATGATCCGATGCGCGGATTCGATTGCGCCGCGTTCCTCGA 29278 |||||||||| ||| | | ||| || || | | ||||| |||||||| ||||| Sbjct 306 CCTGGCCGCAGATTCGTTTCGTGA--CGTGGCACAG-CTCGATGGCGCCGCGGGACTCGA 362 Query 29279 TGCGTCGGGCCACCCGGAGGAAGTCGGGCGCGGTGAGGTCCGCAACAGAGCGTG-ACCCG 29337 | || ||| ||| || | ||||| ||||||| | ||| | || || || Sbjct 363 TACGCCGGAGCACGGACAGCAGTTCGGGGGCGGTGATCT-CGCGGACGGGCCTGTTGCCT 421 Query 29338 ATCCAGGGGAATACGTCGTTCTTCA-----TCCAGG--CTTC--GACCT---TCTCCGCA 29385 ||||||||||| || || ||| || |||||| |||| | | | |||| | Sbjct 422 ATCCAGGGGAACACATCCTTCCGCAGACGCTCCAGGGTCTTCGTGGCGTGGCTCTCTG-- 479 Query 29386 TAGCTGGGCACCCAGGGGCGCGCGGCCAGCCACTCATTGGCGATGGTCTCGAAGCTGTCC 29445 | || | || | |||| ||| ||||||| ||||||| ||||||||||||| Sbjct 480 -ACTTGTTCGCCATGTGGCG---GGCGTGCCACTCCAGGGCGATGCGCTCGAAGCTGTCC 535 Query 29446 GAGCCCAGGGCGGATTGGGCGAGGGCAGCAGCCTTCTTCTGCGCGCCTGGGTCGACGCCT 29505 ||| ||| || || | || || ||||| || || ||||||| ||| Sbjct 536 TCACCCGCCTCGG--TGCGCTTG----GCGGCTTTCTTGTGGTCGTTCGGGTCGATGCCC 589 Query 29506 CGGGCCAGCAGCCGGCGGGCTTCGTCGCGGGCCTCGNNNNNNNNNNCCAAGGAGACATCC 29565 || |||||||| ||| || | ||||||| || ||| ||| || Sbjct 590 TGGCCCAGCAGCGCGCGCGCCTTGTCGCGGCGGGCGCGGGCCTYCTTCAAACTGACCTCG 649 Query 29566 GGGTACAGGCCGATCGAAAGCAGCTTCTCCTTGCCGGCGATGCGGTACTTCCAGCGCCAG 29625 || || | ||| | | | ||||||||||||||| |||| |||||||| || ||| Sbjct 650 GGATAGACGCCCAAGGCCATCAGCTTCTCCTTGCCTCCGATCCGGTACTTGAGCCGSCAG 709 Query 29626 CTGCGCGCACCGGTCGGGGTGAGATAGAGGTACAGGCCGCCACCGTCGGTGATCTTCTGC 29685 ||||| ||| || ||| | ||| ||||||| | || | | ||| Sbjct 710 TATCGCGCGCCGCCTGGCATGACGTGAAGGAACAGGCCTTTCTCATCCGCCAGCTTGAAG 769 Query 29686 GGTTTGTCGCTGGGCTTGGCGCGCCTGATGGCTGCGTCGGTCAGAGGCATTGGGGGT 29742 | ||| ||| |||| |||||| | || ||| | ||| || || | |||||||||| Sbjct 770 GCTTTCTCGGCGGGCCTGGCGCTGCGGACGGCGGTGTCTGTAAGTGCCATTGGGGGT 826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128788101949606