Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_011611.1 Length=36885 Score E Sequences producing significant alignments: (Bits) Value seq2106 147 5e-31 seq4510 127 5e-25 >seq2106 Length=2500 Score = 147 bits (162), Expect = 5e-31 Identities = 341/505 (68%), Gaps = 9/505 (2%) Strand=Plus/Plus Query 17212 GCCGCTATCGAGTACCTGGAGCGAAAGGGATTCGCCATCACTTGGAACTGGCATGACGTT 17271 ||||| |||| ||||| ||| ||||| | | | || ||||||||||| || | | Sbjct 1710 GCCGCGATCGCCTACCTCCAGCACAAGGGCTACAAGCTTACCTGGAACTGGCAGGA-GAT 1768 Query 17272 GACGCGGCCA--CCCACGCCCGCGCTCTGACCGTTGCCAGAGCAGCACGCCTGGACGTGC 17329 | | | | | ||||||| || || | ||| |||| | | || || ||| ||||| Sbjct 1769 GCTG-GACGATGCCCACGCACGGGCCTTTACCATTGCGAAGSCGGCGCGGCTG-ACGTGG 1826 Query 17330 TCCAGGACATTCGCGACGCCCTGGTCGAGAACCTGGAGCGCGGCGAGACGCTTCGAGACT 17389 | ||||||||||| | ||||| | || || | |||| | ||||| |||| Sbjct 1827 TGCAGGACATTCGGAATGCCCTYGACGTCGCGCTCCGCCACGGCCAAACGCTCAAGGACT 1886 Query 17390 TCAAGCGCAACCTGCGGCCGACCCTGGAGGCGAAAGGCTGGTGGGGTCGCCAGGTGGTAG 17449 || | ||| || ||| || ||| | || || ||||||||||| ||| | | | Sbjct 1887 TCCAAAAAAACTTGAAGCCCACGCTGCAAGCCAAGGGCTGGTGGGGCAAACAGATCATCG 1946 Query 17450 TCG-CGCCGGATGGCGGCGCCGAGGTTGCACAACTGGGCAGCCCGCGCCGCCTGGATACC 17508 | | || || || ||||||| || | ||||||||||| | || |||| ||| Sbjct 1947 TTGACGGCGCCGGGAWTS-CCGAGGTCGCCCSGCTGGGCAGCCCATGGCGGCTGGCTACR 2005 Query 17509 ATCTACCAGACCAACATGCAGTCGGCCTACATGGCAGGGCGCTACGCGGCCGCCTACGAA 17568 ||||||| ||| ||| |||| || |||| |||||| | | ||| | |||| Sbjct 2006 ATCTACCGGACGAACCTGCAATCCGCCTTCATGGCGGCGAATTACCAAGAAATGGCCGAA 2065 Query 17569 GCCAGGGAAACCCACCCTTACTGGATGTATGTGGCGGTGATGGATGGCGTTACCCGGCCC 17628 |||| ||| | |||||| || ||| || || |||||| |||| ||| ||||||||| Sbjct 2066 GCCACGGACAGCCACCCCTATTGGCAATACGTCGCGGTGCTGGACGGCCGCACCCGGCCC 2125 Query 17629 AGCCATGCCGCCCTGCATGGGAAAGTGTTCAGGTGGGACGATCCGATCTGGCAGCAC-AT 17687 ||||| ||| || | || ||||||| | |||||||| |||||| | ||| || Sbjct 2126 AGCCACCGGGCCATGAACGGCCGAGTGTTCCGCCATGACGATCCCATCTGG-AACACGAT 2184 Query 17688 CACCCCGCCCAATGGCTACAACTGC 17712 | ||||||||||||| ||||||| Sbjct 2185 CTGGCCGCCCAATGGCTTCAACTGC 2209 >seq4510 Length=976 Score = 127 bits (140), Expect = 5e-25 Identities = 142/187 (76%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 24819 GCCCTGGTCCAGTTTGGCCAGGCTCTGGCGTCGGGCGTTCTGCGCGGCGAGGAATTCAAC 24878 ||| || | ||||| |||||||| ||||||||||| || |||||||||||||| |||||| Sbjct 713 GCCTTGCTGCAGTTCGGCCAGGCGCTGGCGTCGGGTGTGCTGCGCGGCGAGGAGTTCAAC 654 Query 24879 TCGGTCAGCGAGCA-GGCGCCCGCGCTGCTGAAAGCAATTGCCGATGGCCTCAACGTCAA 24937 |||||| |||| | || |||| ||| | | || | ||||| ||||| ||||| Sbjct 653 TCGGTCGTCGAGAACAGCCCCCG-TCTGGCGCAGGCCTTGGCCGACGGCCTGAACGTGCC 595 Query 24938 TATCGGCGAGCTTCGCAAGATGGCGAACGAAGGCCAGTTGACGGCTGACGTCCTGGTGGA 24997 ||||| ||| |||||| |||| | ||||| ||| | || || ||||| ||||| | Sbjct 594 CATCGGGCGGCTGCGCAAGCTGGCCGAGGAAGGACAGCTCACCGCCGACGTGGTGGTGAA 535 Query 24998 CGCCTTG 25004 ||||||| Sbjct 534 CGCCTTG 528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117902437142218