Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_011613.1 Length=36632 Score E Sequences producing significant alignments: (Bits) Value seq2106 172 1e-38 >seq2106 Length=2500 Score = 172 bits (190), Expect = 1e-38 Identities = 350/510 (69%), Gaps = 15/510 (3%) Strand=Plus/Plus Query 16164 AGGCCGCTATCGAGTACCTGGAGCGCAAGGGATTCGCCATTACCTGGAACTGGCACGA-- 16221 ||||||| |||| ||||| ||| |||||| | | |||||||||||||||| || Sbjct 1708 AGGCCGCGATCGCCTACCTCCAGCACAAGGGCTACAAGCTTACCTGGAACTGGCAGGAGA 1767 Query 16222 TGTTG-ACGCGGCCACCCATGCCCGAGCGCTGACGGTGGCCAAGGCGGCACGCCTGGACG 16280 || || ||| ||| || || || || | || | || ||| |||| || ||| ||| Sbjct 1768 TGCTGGACGATGCC---CACGCACGGGCCTTTACCATTGCGAAGSCGGCGCGGCTG-ACG 1823 Query 16281 TGCTCCAAGACATCCGCGACGCCCTGGTCGATAACCTGGAACGTGGCGGAACGCTGCGCG 16340 || | || ||||| || | ||||| | || || | ||| |||||| | Sbjct 1824 TGGTGCAGGACATTCGGAATGCCCTYGACGTCGCGCTCCGCCACGGCCAAACGCTCAAGG 1883 Query 16341 ACTTCCAGCGCAACCTGCGCCCGATCCTGGAGGCCAAGGGCTGGTGGGGACGCCAGATAG 16400 ||||||| ||| || || | ||| | ||||||||||||||||| ||||| Sbjct 1884 ACTTCCAAAAAAACTTGAAGCCCACGCTGCAAGCCAAGGGCTGGTGGGGCAAACAGATCA 1943 Query 16401 TGGTTG-CGCCGGACGGCGGCGCCGAGGTCGCCCAGCTCGGCAGCCCGCGCCGGCTGGAA 16459 | |||| || || ||| |||||||||||| ||| |||||||| | ||||||| Sbjct 1944 TCGTTGACGGCGC-CGGGAWTSCCGAGGTCGCCCSGCTGGGCAGCCCATGGCGGCTGGCT 2002 Query 16460 ACGATCTACCAGACCAACATGCAGTCGGCCTACATGGCCGGGCGCTATGCCGCCGCAT-- 16517 || ||||||| ||| ||| |||| || |||| |||||| |||| | || || Sbjct 2003 ACRATCTACCGGACGAACCTGCAATCCGCCTTCATGGC--GGCGAATTACCAAGAAATGG 2060 Query 16518 ACGAGGCCAGGGAAACTCACCCTTACTGGATGTATGTGGCCGTCATGGACAGCGTCACCC 16577 ||| |||| ||| | ||||| || ||| || || || || ||||| || ||||| Sbjct 2061 CCGAAGCCACGGACAGCCACCCCTATTGGCAATACGTCGCGGTGCTGGACGGCCGCACCC 2120 Query 16578 GGCCCAGCCATGCGGCGCTACATGGCAAGGTGTTCCGCTGGGACGACCCGATCTGGCAGC 16637 |||||||||| ||| | | ||| ||||||||| ||||| || |||||| | | Sbjct 2121 GGCCCAGCCACCGGGCCATGAACGGCCGAGTGTTCCGCCATGACGATCCCATCTGG-AAC 2179 Query 16638 AC-ATCATGCCGCCGAATGGCTACAACTGC 16666 || ||| |||||| ||||||| ||||||| Sbjct 2180 ACGATCTGGCCGCCCAATGGCTTCAACTGC 2209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117092891817036