Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq5639 84.2 2e-11 >seq5639 Length=3794 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||||| || ||||||||||||||||| || || | || | ||| ||| Sbjct 842 ACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTCT 901 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | |||||||||||| | || |||| || ||||| ||||| || || || || | | || Sbjct 902 AACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTAT-CTTG 960 Query 127025 ATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 | ||| || || | | ||| | ||||| | || || || | || | ||||| Sbjct 961 AATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTT 1020 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| | ||||||||||| || ||||| Sbjct 1021 TCCGGTTAATGTTTTTACAAAGATTTGCAT 1050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475466997836880