Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq214 89.7 4e-13 >seq214 Length=8422 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/213 (69%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC----ATC 39566 || ||||| ||||| ||||||||| ||||||||||| | | | |||| ||| Sbjct 6717 ACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATA----GTGTTCTACCATC 6772 Query 39567 GTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC 39626 || ||||||||||| |||||||||| | || ||||| | || | |||||||| || Sbjct 6773 TTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTATC 6832 Query 39627 GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686 ||||| ||||| | | | || || | ||| || || | ||| || || Sbjct 6833 TTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGT 6892 Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || ||||| |||||||| || |||||||| Sbjct 6893 TTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 6925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347345523704471