Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq8 120 4e-22 >seq8 Length=6382 Score = 120 bits (132), Expect = 4e-22 Identities = 435/674 (65%), Gaps = 9/674 (1%) Strand=Plus/Plus Query 110374 CCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTA 110433 || || || || ||||| ||||| || || |||||||| ||||| | ||| ||||| | Sbjct 4182 CCTAAATTTTTTTGATTAGATTTAGAATTACATGCATCTTTATATAACATATATGGTACA 4241 Query 110434 CCAGTTTCCGTCTGTGACTTG--AGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTG 110491 |||||||| | | |||||| | ||| || ||||| ||| || | |||||| Sbjct 4242 CCAGTTTC--TATTTGACTTTGTAAAATAGCAAACCATAAATCTTGTGCAAGAACAGTTT 4299 Query 110492 CGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACA 110551 || | | | ||| || || || || || || || | |||||||| | || | Sbjct 4300 TTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAATTTTTCAAATTCTTCACCCCAAG 4359 Query 110552 CATCAGAAAGACCCTTCGCCTTG-TCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCA 110610 ||| | ||||| | || | ||||| | || | |||||||| | || | Sbjct 4360 ATTCACTTA-ACCCTGGACATTCATTAGGACACATTAGTGTCCAATTTCTATTTTCTTTT 4418 Query 110611 ACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCC 110670 || || ||||| || | ||||| | ||| || || | || | || | | Sbjct 4419 ACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCTCTAGCTCTTAAT 4478 Query 110671 TCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGT 110730 ||||| | ||| || || | || || ||||| || | ||||| || ||||||||| Sbjct 4479 TCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCAGAATGCCATGGT 4538 Query 110731 TCGAGATAGACAGCGATGGATCCCTTACGACGACC--CGCCTGGTTA-ACATAGCGTGCT 110787 || | ||| ||||| | || || || | || | ||| | | ||||| | ||| Sbjct 4539 TCTATATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACCTTGATCTACATATCTAGCT 4598 Query 110788 GTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTA 110847 || |||| || || || | ||| |||| | |||| ||| |||||| || || ||| Sbjct 4599 GTATCATTAAAAACTCTTAACATTGGAACTAAACCATTTGATATACCATTAGTTCCTCTA 4658 Query 110848 ATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTA 110907 || || || | | | || || || | | | || ||||| ||||| ||| Sbjct 4659 ATATAAGAATTCTGTCCTCTTATATCTTGTACAGCAACTCCTATACCTCCCGCGGTTTTA 4718 Query 110908 CTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTG 110967 |||||| ||||| | | | | ||| || | ||||| || || ||||||| || | Sbjct 4719 CTAATTAAAGCACATTGTTTTAATGTTTCAAATATACCTTCGATAGAATCTGATTTCATA 4778 Query 110968 GCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGT 111027 | | |||||||||||| ||||| || ||||| || ||||| | ||| || | |||||| Sbjct 4779 GATAATAGAAAGCAAGATGACATTTGTGGACGTGGTGTTCCTGAATTAAATAATGTAGGA 4838 Query 111028 GTCGCATGAATGAA 111041 || ||||| |||| Sbjct 4839 GTAGCATGTGTGAA 4852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588934131168600