Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq8 114 2e-20 >seq8 Length=6382 Score = 114 bits (126), Expect = 2e-20 Identities = 442/681 (65%), Gaps = 15/681 (2%) Strand=Plus/Plus Query 105934 ATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 105993 ||||||||| | || || ||||| || |||||||||| ||||| ||||||| || || Sbjct 3563 ATAGATGTTACTTGTATATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGTTGA 3622 Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTT-TCCTTGATGCGTT 106052 ||||||||||| ||||| | | |||| || | | || | | ||| | || Sbjct 3623 AGCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTT 3682 Query 106053 CCTTGAGAACATCCCAGTCG---TAGTTGAGCT-TGGTTTCACCTTCCCACATATCAAAT 106108 || | || |||||| || || || | | ||| || |||| ||||||||||| Sbjct 3683 TTTTAATAA-ATCCCAATCCCAATATTTATTATCTACTTTTACATTCC-ACATATCAAAT 3740 Query 106109 TGAAGCACCCCTTGGGACGTG--GGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTT 106166 || | | ||||| ||| || || ||| | | ||| ||||| | || || || Sbjct 3741 TGTAATATCCCTT--GACTTGCTGGGCTACCTTTATATGATTCATATGGTCCATGTATTT 3798 Query 106167 CAGCCAATTC-ACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCA 106225 || ||||| |||| | || | | ||| | |||||| |||||||| || | | Sbjct 3799 GTGCTAATTCAACAG-ACATTTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTA 3857 Query 106226 TTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCG 106285 || | || || |||||||| || ||| ||| || | | | |||||| || || Sbjct 3858 TTTAATTCTTTAGCTTCATCAGATTCATATGGATATCTTAAAAGCATAAATGTGTCTGCT 3917 Query 106286 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 106345 | ||||| || || | |||||||||| |||| |||| || ||| || | | Sbjct 3918 AATCCTTGTACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTTTA 3977 Query 106346 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 106405 | || ||| ||||||| ||||| | | | || |||| | |||| ||| || || || Sbjct 3978 ATTGGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATA 4037 Query 106406 TCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA-AGGGC 106464 |||| | ||||| | ||||||| | ||| || ||| | |||| | | || Sbjct 4038 TCATATAATTTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACA-AATTTGCATAATGC 4096 Query 106465 GATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGT 106524 ||||| |||||||| |||||||| ||||| ||| || || | ||||| Sbjct 4097 AATTGAAGCCAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATTATTTCACA 4156 Query 106525 ACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGC 106584 ||| || || || ||||| || || ||||| ||||| ||| || || || || Sbjct 4157 ACATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTACATGC 4216 Query 106585 ATCCTTGTAGAGCATGTAGGG 106605 ||| || || | ||| || || Sbjct 4217 ATCTTTATATAACATATATGG 4237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589938859739880