Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq5639 143 6e-29 seq214 140 7e-28 >seq5639 Length=3794 Score = 143 bits (158), Expect = 6e-29 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||||||||||||||| || || | | ||||| |||||||| | ||| || || Sbjct 854 GTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTCTAACTGTTTTCCA 913 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || | || |||||| || |||||||| |||||||| ||||||||||| || Sbjct 914 GCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTAGCTTTA 973 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || ||||| ||||| || ||| || ||||| || | || ||||| || || ||| Sbjct 974 ACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTT 1033 Query 195124 TTTACGAACACTTGCATTT 195142 ||||| || | |||||||| Sbjct 1034 TTTACAAAGATTTGCATTT 1052 >seq214 Length=8422 Score = 140 bits (154), Expect = 7e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| || || | || || ||||||||||| || || || | || || Sbjct 6476 TCTTAATCTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAGTGT 6535 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | || || || || || || | || ||||||||| |||||||| || Sbjct 6536 TCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCC 6595 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| ||||||||||| || || || ||||| || || || ||| || ||||| Sbjct 6596 TTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAG 6655 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | |||||||| || || |||||||| || | ||||| Sbjct 6656 AGTTATAGTCTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 6697 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| | || | ||| || |||||||||||||| ||||| | || || Sbjct 6704 TCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGT 6763 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | || || || || || || | || |||||| || ||||| || || Sbjct 6764 TCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGGATTCC 6823 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| ||||||||||| || || || ||||| || || || ||| || ||||| Sbjct 6824 TTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAG 6883 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || ||||| || || |||||||| || | ||||| Sbjct 6884 AGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 6925 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| | || | ||| || |||||||||||||| ||||| | || || Sbjct 6932 TCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGT 6991 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | || || || || || || | || ||||||||| |||||||| || Sbjct 6992 TCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCC 7051 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||| ||||| ||||| || || || ||||| || || || ||| || ||||| Sbjct 7052 CTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAG 7111 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || ||||| || || |||||||| || | ||||| Sbjct 7112 AGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 7153 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| | || | ||| || |||||||||||||| ||||| | || || Sbjct 7160 TCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGT 7219 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | || || || || || || | || |||||| || |||||||| || Sbjct 7220 TCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCC 7279 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| ||||||||||| || || || ||||| || || || || || ||||| Sbjct 7280 TTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGCTCTACATCAAG 7339 Query 195099 GGTAACCGTCTTTCCTG 195115 || | || ||||||| Sbjct 7340 AGTTATAGTTTTTCCTG 7356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109400757969929