Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq362 138 1e-27 seq4090 102 1e-16 seq2168 102 1e-16 >seq362 Length=22319 Score = 138 bits (152), Expect = 1e-27 Identities = 431/656 (66%), Gaps = 26/656 (4%) Strand=Plus/Plus Query 104796 AATTTGATTTAAGTGAAGGAATTGTACCATTGCTTACAACaaaaaaaaTAGTTTACGCCA 104855 ||||| |||||| | || ||| | ||||| | |||||||||||| || ||| || | Sbjct 17086 AATTTAATTTAAATCAAT--ATTTT-CCATTATTAACAACAAAAAAATTA-TTTGTGCGA 17141 Query 104856 A-TATTCTTAAAGAATTATTATGGGTGATGAAAGGTTTAACAAATTCTAAC---TTGTTA 104911 |||| || |||||||||||||| | || | ||| ||||||| || |||||| Sbjct 17142 GGTATTATTGAAGAATTATTATGGTTTATAAGAGGAGAAACAAATGGAAATACATTGTTA 17201 Query 104912 AATGAAATTGGTGTTAAAGTATGGAATGATAATGGTTCACGTAAGTTTTTAGATTCTTGT 104971 | ||| || | | | ||||| | | |||||| || | | ||||||||| | | Sbjct 17202 GAAAAAAATG---TAAGAATATGGGAAGCTAATGGAACAAGAGAATTTTTAGATAATAGA 17258 Query 104972 GGATTTCACTTTCGAAAAGAAGGT---GATTTAGGACCAATTTATGGATTTCAATGGAGA 105028 ||| |||| | ||||| | ||| | || || ||||||||||| ||||||||| Sbjct 17259 AAATTA---TTTCATAGAGAAGTTAATGATCTTGGTCCTATTTATGGATTCCAATGGAGA 17315 Query 105029 CATGCTGGAGCTCAATATATCGA-CTG--TGATACCGACTATACCGGCCAAGGTATAGAC 105085 ||| ||| ||| |||||| || || ||||| | |||| | ||||| | || Sbjct 17316 CATTTTGGTGCTGAATATACAGATATGCATGATA---ATTATAAAGATAAAGGTGTTGAT 17372 Query 105086 CAATTAAGTCAAGTTATAGAAACTATAAAAAATAACCCCGGGTGTCGAAGAATAATTATA 105145 ||| ||| | ||||| | || |||||| | || ||| || |||| ||| || Sbjct 17373 CAACTAAAAAATATTATAAATTTAATTAAAAATGATCCTACATGTAGACGAATTATTTTA 17432 Query 105146 GATAGTTGGAATGTGTCACAATTATCAGATATGGCTCTTCCACCGTGTCATTGTTTGGTA 105205 | |||||||| | | ||| | ||||| | || || |||||| ||| Sbjct 17433 TGTGCATGGAATGTAAAAGATTTAGATAAAATGGCATTACCTCCATGTCATATTTTATGT 17492 Query 105206 CAATTTTACATTAGAAATAAAATTTATTTAGATTGTCAATTGTATCAAAGATCTGCAGAT 105265 |||||||| || || || | ||| ||| |||||||||||||| ||| Sbjct 17493 CAATTTTATGTTTTTGATGGAA---AATTATCATGTATTATGTATCAAAGATCTTGTGAT 17549 Query 105266 TTAGGATTAGGTGTACCATATAATATTGGTTTCTATTCATTTTTGGTGTGTGTTCTCTCA 105325 |||||| |||| || |||| ||| |||| || ||||| | || | | | | || Sbjct 17550 TTAGGACTAGGAGTTCCATTTAACATTGCTTCTTATTCTATATTTACATATATGATAGCA 17609 Query 105326 AAATGGTGTAATCTAACCCCCGGAAAATTTATTCATACTTTTGGAGATGTTCATGTATAT 105385 || ||||| || || | ||||||| ||| || || ||| |||||| ||| Sbjct 17610 CAAGTATGTAACTTACAACCAGCTGAATTTATACATGTATTGGGTAATGCTCATGTTTAT 17669 Query 105386 TCTAACCATGTTGACCAATTAAAAATTCAATTAAACAGAAAACCTTACACCTTCCC 105441 ||| ||| |||| ||||||||||| ||||| |||| ||||| | ||||| Sbjct 17670 AATAATCATATTGAAAGCTTAAAAATTCAGTTAAATAGAACTCCTTATCCTTTCCC 17725 >seq4090 Length=18681 Score = 102 bits (112), Expect = 1e-16 Identities = 123/161 (76%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 126945 ATTTTTATAGGTCCAACATACTATCATCGTCTTAAACATATGGTTAAAGATAAAATGCAT 127004 || ||||| ||||||| ||| ||||| | |||||||||||| |||||||||| ||| Sbjct 14325 ATATTTATGGGTCCAATATATTATCAGAAATTAAAACATATGGTTCAAGATAAAATTCAT 14266 Query 127005 GCTAGAAGTC-ATGGTCAAGTAACAA-CATTACATCGTCAACCAAACTG-TGGTCGTTCC 127061 |||||| || | || | || |||| |||| || ||||| ||||| ||||| || Sbjct 14265 GCTAGATCTCGAGGGCCTAG--ACAATTATTAACACGACAACC-AACTGAAGGTCGATCA 14209 Query 127062 CAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTG 127102 ||| || ||||||||| |||| |||||||||| |||||| Sbjct 14208 AAAGAAGGAGGATTAAGACTTGGCGAAATGGAAAGAGATTG 14168 >seq2168 Length=13317 Score = 102 bits (112), Expect = 1e-16 Identities = 144/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 126941 TAAAATTTTTATAGGTCCAACATACTATCATCGTCTTAAACATATGGTTAAAGATAAAAT 127000 |||||| |||||||| ||||||| ||||| | | ||||||||||| |||||||||| Sbjct 8974 TAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTAGAAGATAAAAT 9033 Query 127001 GCATGCTAGAAGTCATGGTCAAGTAAC-AACATTACATCGTCAACCAAACTGTGGTCGTT 127059 |||||||||||| || | |||| | |||||| | ||||||| || | | Sbjct 9034 ACATGCTAGAAGTAGAGGACCTTTAACTATGATTACA-AGGCAACCAACAGAAGGAAGAT 9092 Query 127060 CCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGTATTTTGGTTCATGGAG 127119 | || |||||| | |||||||| ||||||||| ||||||||| | ||||||| Sbjct 9093 CAAGAGATGGTGGTCTTAGATTTGGTGAAATGGAACGAGATTGTATGATATCTCATGGAT 9152 Query 127120 CCACACAATTTTTAAATGAA 127139 | | || | ||||| ||| Sbjct 9153 CTGCTAAAATGTTAAAAGAA 9172 Score = 93.3 bits (102), Expect = 6e-14 Identities = 126/172 (73%), Gaps = 8/172 (5%) Strand=Plus/Plus Query 126099 TTAAATTATCCTCAAAAACCACTTGT---TACAACCGATATTGCAGAAT-TTAATGGTCT 126154 ||| | ||||||||||||||| | || ||||| | || |||||| || | | | Sbjct 7772 TTATACTATCCTCAAAAACCATTAGTATGTACAAAAGCTA---CAGAATATTTACATTTT 7828 Query 126155 AAATGAATACCCCAATGGTATTAATGCAATTGTAGCAATCGCGTGTTACACTGGATACAA 126214 ||| || | || ||| || ||||||||||| ||||| |||||| || ||||| || Sbjct 7829 AAA-GATTTACCAGCTGGAATCAATGCAATTGTGGCAATTATGTGTTATACAGGATATAA 7887 Query 126215 TCAAGAAGATAGTGTTATTCTTAATAAAGCATCTATCGAAAGAGGTTTATTT 126266 ||||||||||||| | ||| | ||| || | ||||| || |||| |||||| Sbjct 7888 TCAAGAAGATAGTTTAATTATGAATCAATCTTCTATTGATCGAGGATTATTT 7939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658356395762520