Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq8 601 4e-167 seq89 336 2e-87 >seq8 Length=6382 Score = 601 bits (666), Expect = 4e-167 Identities = 1162/1701 (68%), Gaps = 42/1701 (2%) Strand=Plus/Plus Query 47123 CTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTC 47182 ||||||||| || | || | ||||| |||||||| | |||| | |||| || || Sbjct 3326 CTGATCAATGAAAACCCCACGGTCAGCAGCCATATCAATAATATTCTTTTGCTTAATTTC 3385 Query 47183 CCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGAT---TAGTATTTTGAATAGA 47239 ||| || |||||||| | || ||| | || | || | | || ||| ||| | | Sbjct 3386 CCAAACAGTTTTATACAATTCTTTTAAATCAGCAGGAATTTCACTAATATATTGTACACT 3445 Query 47240 TCCTCCgttttctat-aatt-ttgttttttaa-ttcatttgaccaaagttttcgttcagt 47296 ||| || | || |||| |||||| || ||||| |||||| || ||| Sbjct 3446 TCCATTGTGAGCAATCAATTGTTGTTTCATATCTTCATC---CCAAAGGCCTCTATCAAA 3502 Query 47297 taatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCT 47356 | |||||| | |||||||||||||| ||||| ||| || ||| ||| || Sbjct 3503 AAGATCTTTTAATAAATGAGGATTAACAACAAAGAATTCACCACTTAATAC---ACGTCT 3559 Query 47357 ATAT---ATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGT 47413 ||| || ||||||||||||||||| | |||||||||||||| |||||||| | ||| Sbjct 3560 ATAATAGATGTTACTTGTATATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGT 3619 Query 47414 TGATGCTGTAGGCATGGATGCAACTAATAAGCTA-TTTCTTACTCCATATTTTTGTATCT 47472 ||| ||||| ||||| | ||| | || ||| | ||||||| ||||| | ||| | Sbjct 3620 TGAAGCTGTTGGCATAGGTGCTAA-AAGAAGAGAATTTCTTAATCCATGCATACTTATTT 3678 Query 47473 NNNNNNNNNNNNGTTTCCAATCCCAA-AGATCTGATGGAACA--ACATTCCAAAAATCAT 47529 | |||||||||| | | | || | |||||||| | |||| Sbjct 3679 TTTTTTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTACATTCCACATATCAA 3738 Query 47530 ATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTT 47589 |||| | || |||| |||| || ||| ||||||| || ||| || || | || || Sbjct 3739 ATTGTAATATCCCTTGACTTGCTGGGCTACCTTTATATGATTCATATGGTCCATGTATTT 3798 Query 47590 TAGCGAGTTCA-CA-ACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTAT 47647 || | |||| || || | ||| || || |||||| ||||||||||||||| || | Sbjct 3799 GTGCTAATTCAACAGACAT--TTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTT 3856 Query 47648 GTTTAGATTCCTT-GCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTG 47706 |||| |||| || ||||| |||||| | ||||| ||||| |||| Sbjct 3857 ATTTA-ATTCTTTAGCTTCATCAGATTCATATGGATATCTTAAAAGCATAAATGTGTCTG 3915 Query 47707 CCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTG 47766 | |||||||| || || || ||||| |||| ||| ||||||| || ||||||||| Sbjct 3916 CTAATCCTTGTACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTT 3975 Query 47767 GTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAA 47826 | ||| || | ||| | || |||||||||| || | || Sbjct 3976 TAATTGGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAA 4035 Query 47827 TTTCTCTTAATTTATTAAAATCAAA--CTTGTTATT---TAT-AACAAACCTATTAAGTG 47880 | || |||||| ||||||||||| ||| || || ||| |||||| | | || Sbjct 4036 TATCATATAATTTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATG 4095 Query 47881 CTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAG 47940 | || || || | |||||| |||||||| |||| || ||||||| ||||||||| Sbjct 4096 CAATTGAAGCCAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATTATTTCAC 4155 Query 47941 CACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATG 48000 ||||| ||||| |||||| || || || ||||||| |||||| ||||||| Sbjct 4156 AACATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTACATG 4215 Query 48001 CGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCC 48060 | || || || | |||| | ||| ||||||||||| ||| || | |||| || Sbjct 4216 CATCTTTATATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAATAGCAAACC 4275 Query 48061 AAACAGTCCTAGCCTTTATAACAGCTCTAG---CTTTATTATCATGTTCGTATTTAGTAT 48117 | | | || | | | ||||| | | || ||| || | ||| ||||| |||| Sbjct 4276 ATAAA-TCTTGTGCA--AGAACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTAT 4332 Query 48118 ATAACTTCTCAAATTCATCCCCATACACATTATCT-AACCCAGGACATTCATTAGGACAC 48176 |||| || |||||||| || || | | ||| || ||||| |||||||||||||||||| Sbjct 4333 ATAATTTTTCAAATTCTTCACCCCA-AGATTCACTTAACCCTGGACATTCATTAGGACAC 4391 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 || | || ||||| || | ||||||||| ||||||||| ||| |||| ||||| | Sbjct 4392 ATTAGTGTCCAATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATA 4451 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296 || ||||||||| |||| ||||| |||||| || ||| ||| || | | || | | Sbjct 4452 GCATAAAATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAA 4511 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTA 48356 || || | ||||||| |||||||||||||| ||||| || | |||| || ||| Sbjct 4512 AATTCAAAAATATCAGAATGCCATGGTTCTATATATACAGCAAAAGAACCTTTTCTTTTT 4571 Query 48357 TTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATA 48416 || |||||||||| |||||| || |||| ||| |||||||||||||||| || | | Sbjct 4572 CCTCCACCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATTGGAACTAAA 4631 Query 48417 CCATTTGATATACCATTGGTTCCCGAAATATAA-CTTCCACTAGCTCTTATATTACTAAT 48475 ||||||||||||||||| ||||| ||||||| | | | ||||||||| | Sbjct 4632 CCATTTGATATACCATTAGTTCCTCTAATATAAGAATTCTGT-CCTCTTATATCTTGTAC 4690 Query 48476 TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATA 48535 | || |||||||| || || ||||| |||| |||||| |||| | || ||| | Sbjct 4691 AGCAACTCCTATACCTCCCGCGGTTTTACTAATTAAAGCACATTGTTTTAATGTTTCAAA 4750 Query 48536 AATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATG 48595 || ||||| ||| ||| | ||||| ||||||||| ||| |||||||| ||| | Sbjct 4751 TATACCTTCGATAGAATCTGATTTCATAGATAATAGAAAGCAAGATGACATTTGTGGACG 4810 Query 48596 ACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAA 48655 |||||||||||||||||||| |||| ||||| | || |||||| || | || Sbjct 4811 TGGTGTTCCTGAATTAAATAATGTAGGAGTAGCATGTGTGAAATATTTCTGAGACATTAA 4870 Query 48656 TTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCAT 48715 | ||||||||| | | | || | ||| | |||||| || || ||||| | ||| Sbjct 4871 ATGATATGTTTCTAAAGCTTTTTCAAGATCATCTATATGTATTCCAATTGATACTCTCAT 4930 Query 48716 TAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTC 48775 ||| | || ||| || | ||||| |||||| || || ||| || | ||||||| |||| Sbjct 4931 TAATAAATGTTGTGGACGTTCAATAATTTTATTGTTAATTCGTAATAAATATGATCTTTC 4990 Query 48776 CAATGTTTTAAAACCAAAATA 48796 |||||||| || |||||||| Sbjct 4991 TAATGTTTTGAATCCAAAATA 5011 >seq89 Length=9661 Score = 336 bits (372), Expect = 2e-87 Identities = 666/969 (69%), Gaps = 34/969 (4%) Strand=Plus/Minus Query 18571 GATAAAATTTTATTAT--ATTTTAGTTGATTGTTATGTTATGGTTAAAAATCAACATCCA 18628 ||||| ||||||||| | ||| || | |||| || | |||||||||| || | Sbjct 1773 GATAATTTTTTATTATCAAATTTTTTTTTGTATTATATTTTC-TTAAAAATCAGTATTTA 1715 Query 18629 AAGAAAAAGAAT--TCTCTTCATTAGAATTCATTACTCCCATTTTTTGATATTCGGCAAC 18686 ||||||| | ||| ||| || | ||| || || |||||||| || ||||| Sbjct 1714 AAGAAAATACTTGTTCTTTTCTTTG--AGCCATAACACCTGACTTTTGATAATCTGCAAC 1657 Query 18687 TCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATCAAATGG 18746 |||||||||||||||||| |||||||| | ||| ||||| | ||||| ||| || || Sbjct 1656 TCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAATCCATCCAATTGAAAGG 1597 Query 18747 ATTTTTTACATTATATAtttttttGAATCCTAA---TTCTAATAGTAGTCTATCCGCTAC 18803 ||||| || | | | ||| ||||||| |||||||| | ||||| || || Sbjct 1596 GTTTTTAGAATGAAAAACTTTAGAACATCCTAAACATTCTAATAAT---CTATCAGCAAC 1540 Query 18804 AAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGC 18863 ||||| ||||||| ||| | |||||||||| ||||| | | ||||| | Sbjct 1539 AAATTCAATATATTGAGACATGAGCCTTGAATTCATTCCAATTAAATCACAAGGTAAAGA 1480 Query 18864 ATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGAT---ACAACTCT 18920 || || |||| | ||||| | ||||| ||| | ||| | ||||| | Sbjct 1479 TTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTATATTTTGAACAACATT 1420 Query 18921 ATCT--TCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGT 18978 ||| | ||| | | || | | || | || ||||| ||||||| |||| Sbjct 1419 TTCTGGTAATTT--ATTTTCTAATAAAC---TATAAATTAAACAGTTAAAATCAGTATGT 1365 Query 18979 AGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtt 19038 | ||||| || ||||| || ||||||||| ||||||||||||| | | | | | || Sbjct 1364 AAACCCTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCATGTA--ATTTATTTT 1307 Query 19039 tttttt--AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTG 19096 ||||| ||||| || || | | ||| |||| ||| ||||| |||||||| || Sbjct 1306 GTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATTCCTTCTACACATG 1247 Query 19097 CAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCC 19156 || ||| || | ||||||| || || | || ||| || |||||||| |||| Sbjct 1246 CATTAGCTACAATTCTTTCTGCAAAA---GAATTTGTATCATTTATCCATTTAGCAGCCC 1190 Query 19157 AATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCT 19216 | || || ||||| | | ||| || | || |||| || ||||| || | | | Sbjct 1189 ATAATGCTTTATTTTTGATAGCTGGTATATTTTCAATAGCATGAAATAAATTTAATCTTT 1130 Query 19217 CATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTT 19276 | | | |||||||| ||| ||| || |||||||| || |||| ||||| ||||||| Sbjct 1129 CTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTTTCAGAATGTATATTTT 1070 Query 19277 CTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAA 19336 | | ||| || ||||| ||||| | ||||||| | || | |||||| || ||| Sbjct 1069 CAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATAATTTCTACTTCTCTTAAAA 1010 Query 19337 ATCTTTCGA-CCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACA 19395 || || | | |||||||||| || ||||||||||| ||||||||||||||||| ||| Sbjct 1009 AT-TTACTAGCCAAATTTTCTAATACAATTCCATCACTTGCTGCAAAAAATGCTAAAACA 951 Query 19396 TGTTTAATAAAATGTTTTTCATCTGA-GGTTAATGTATTCCAATCATTAATATCTTTAGA 19454 ||||| |||||||||||||||| ||| ||||| | | |||| || | ||| | || Sbjct 950 TGTTTTATAAAATGTTTTTCAT-TGACATTTAATTTTTCAAAATCTTTCAAATCGCTCGA 892 Query 19455 TAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATAT 19514 |||||| | ||||||| |||||||||| ||||| || |||||||| || | ||||| | Sbjct 891 TAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTTTGTAAAAATTCCAAAC 832 Query 19515 ATCACGATA 19523 ||| |||| Sbjct 831 TTCAGGATA 823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562068841090680