Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq89 266 4e-66 >seq89 Length=9661 Score = 266 bits (294), Expect = 4e-66 Identities = 593/881 (67%), Gaps = 17/881 (2%) Strand=Plus/Minus Query 36823 TTTTTTAAAAATCTTCATCTAACGTAAATTTTATTTCCTTATTACTATTCATAACTCCCA 36882 ||| ||||||||| || ||| | |||| | ||| || | | |||||| || Sbjct 1735 TTTCTTAAAAATCAGTATTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTG 1676 Query 36883 TTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATAT 36942 |||||||| ||| |||||| | |||| || |||||||| ||||||| || ||||| Sbjct 1675 ACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTA 1616 Query 36943 TTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGATAATTCCTTCA 37002 ||||| ||| || || || | || | | | || |||| ||| | ||| Sbjct 1615 AATCCATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAAA-CATTCT 1557 Query 37003 GA-AGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATT 37061 | | ||||| ||||||||||| || |||| | |||| || | || || |||||| Sbjct 1556 AATAATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCATTCCAATT 1497 Query 37062 AGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACT 37121 | | || | | || || |||| | |||||| | || || ||||||||| Sbjct 1496 AAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACT 1437 Query 37122 ATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACATGCA 37181 ||||| || ||| | ||| | | || || ||| | || | | |||||| | Sbjct 1436 ATATTTTGAACAACATTTTCTGGTAATTTATTTTCTAATAAACTATAAATTAAACAGTTA 1377 Query 37182 AAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGC 37241 |||||| ||||||||| ||||| ||||| || ||||||||| ||| ||||| || | Sbjct 1376 AAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCATGT 1317 Query 37242 ATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCT 37301 | | | | |||||||| |||||| ||||| |||| |||| ||| || || ||| Sbjct 1316 AATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATTCCT 1257 Query 37302 TCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAt 37361 || || |||| ||||||| | | | |||| || | |||| |||||| Sbjct 1256 TCTACACATGCATTAGCTACAATTCTTTCTGCAAAAG---AATTTGTATCATTTATCCAT 1200 Query 37362 ttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGA 37421 || | ||| ||| || ||| | | | || ||||||| || | || | Sbjct 1199 TTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAATAGCATGAAATA-- 1142 Query 37422 AAGtt--tttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAG 37479 || || | |||||| |||| | |||||| ||||||||| ||||||||| |||||| Sbjct 1141 AATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTTTCAG 1082 Query 37480 AGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGA- 37538 | || |||||||||| |||||| |||||| |||||| | |||||| |||||| Sbjct 1081 AATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCA-ATAATTTCT 1023 Query 37539 ACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAG 37598 || || | ||||| | |||| || ||||| || || |||||||| |||||||| Sbjct 1022 ACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACAATTCCATCACTTGCTGCAAAA 963 Query 37599 AAAGCAAGAACATATTTTATAAAATGTCTTTCAT---CATTTGATAATTTTTTCCAATCA 37655 || || | ||||| ||||||||||||| |||||| |||| |||||||| |||| Sbjct 962 AATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATT---TAATTTTTCAAAATCT 906 Query 37656 TTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 || | ||| | |||||||||| ||| ||| | |||||||| Sbjct 905 TTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAA 865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592274693679480