Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq3903 158 2e-33 >seq3903 Length=1754 Score = 158 bits (174), Expect = 2e-33 Identities = 304/440 (69%), Gaps = 15/440 (3%) Strand=Plus/Minus Query 22938 GTATTTCCCTTTGCGGTCGGCGTAGGAAACTTCGCACTCTTCATCAGATTCAAAGAACAG 22997 |||||| || |||||||| |||||| ||| || | || || | | | ||||| Sbjct 1272 GTATTTGCCGCTGCGGTCGCGATAGGAAGTTTCACAGACGTCGTCGGCGCCGAGGAACA- 1214 Query 22998 AATTTGTGCGCAAC--CTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTGTGGTATTGGAA 23055 || || ||||| ||||| |||||||||| ||||| || ||||| |||||| Sbjct 1213 -ATACCTGGGCAACGCCTTCGTTAGCGTAGATCTTCGCCGGCAGGGGCGTGGTGTTGGAA 1155 Query 23056 AACTCCAGAGTAAGCGAGCCTTTCC-ATTCTGGTTCCAGCGGCGTGACGTTTACGATGAT 23114 |||||||| || | || ||| ||| |||| || ||||| |||||||| || |||||||| Sbjct 1154 AACTCCAGGGTCA-CGTGCCCCTCCCATTCCGGCTCCAGGGGCGTGACATTGACGATGAT 1096 Query 23115 GCCGCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTT 23174 |||||| || ||||| |||||||| || |||||||| | ||||| || || || Sbjct 1095 GCCGCAGCGGGCATAGGTCGATTTACCCAGGCAGATGGTCAGGACGTCGCGGGGGATACG 1036 Query 23175 GAAGTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGGAATGATCAGGCCTTGGCC 23234 ||||| ||| || ||||| ||||| || ||||||||||| | | | || Sbjct 1035 GAAGTACTCCACGGTCCGAGCCAGCGCGAATGAATTGGGCGGAATGAT--GCACACGTCC 978 Query 23235 GTTTGGAACGTGCTTCGTAACGAAATTGTCTTCGGTGAAATTCTTTGGATCGACAACCGC 23294 | || | | ||| ||||| ||| | ||||||||| |||||||| | || Sbjct 977 G---AGACCAGG--TCG--ACGAAGCTGTTCTGATCGAAATTCTTGGGATCGACGATGGC 925 Query 23295 GTTATTCAGGTTGGTGAAAACCTTGAATTCGTTACCGCAACGAATATCGTAGCCGTAGCT 23354 ||| | ||||||||| | |||||||||||| || || | |||||||| || || Sbjct 924 CGAATTGATGTTGGTGAATATCTTGAATTCGTTGGAACAGCGGACGTCGTAGCCATAACT 865 Query 23355 GGAAACACCGTAGGGAATGA 23374 || ||||||| |||| Sbjct 864 CGAGGTGCCGTAGGAGATGA 845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897529792314960