Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq214 95.1 9e-15 seq5639 89.7 4e-13 >seq214 Length=8422 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 || || ||||||| || |||||||||||||| ||||||||||| ||| | | || Sbjct 6714 AAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCT 6773 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 || || || || || ||||| || | || |||||||| | || | || || || || Sbjct 6774 TCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTATCT 6833 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 ||| || ||| ||| | | || || || | || || || | || || ||| Sbjct 6834 TGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTT 6893 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || |||||||||||||||||||| Sbjct 6894 TTTCCAGTTAATGTTTTTACAAAAATCTGCAT 6925 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 || || ||||||| || |||||||||||||| ||||||||||| ||| | | || Sbjct 6942 AAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCT 7001 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 || || || || || ||||| || | || ||||| || | |||| ||||| || || Sbjct 7002 TCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCCTCTTTATCT 7061 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 || || ||| ||| | | || || || | || || || | || || ||| Sbjct 7062 TGGATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTT 7121 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || |||||||||||||||||||| Sbjct 7122 TTTCCAGTTAATGTTTTTACAAAAATCTGCAT 7153 >seq5639 Length=3794 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||||| || ||||||||||||||| || ||||||| ||| | || || Sbjct 842 ACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTCT 901 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 ||||| || || ||||| || | || |||||||| | |||| || || || || | Sbjct 902 AACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGA 961 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||| ||| | | || || || | || || || | || || |||||| Sbjct 962 ATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTTT 1021 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||||||||| || ||||| Sbjct 1022 CCGGTTAATGTTTTTACAAAGATTTGCAT 1050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380911197095901