Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq362 134 3e-26 seq622 89.7 1e-12 >seq362 Length=22319 Score = 134 bits (148), Expect = 3e-26 Identities = 199/280 (71%), Gaps = 4/280 (1%) Strand=Plus/Plus Query 133907 AAAAATAATCCTGATTCTCGACGTCATATTCTAACTGCATGGAATGTTGGTGAACTAGAT 133966 |||||| ||||| | | |||| |||| || |||||||||||| || ||||| Sbjct 17400 AAAAATGATCCTACATGTAGACGAATTATTTTATGTGCATGGAATGTAAAAGATTTAGAT 17459 Query 133967 AAAATGACTTTGCCACCATGTCATTGCTTTAGTCAATTCTTCGTAAATGACGGTAAGTTA 134026 |||||| | || || ||||||||| || ||||||| | || ||| || || ||| Sbjct 17460 AAAATGGCATTACCTCCATGTCATATTTTATGTCAATTTTATGTTTTTGATGGAAAATTA 17519 Query 134027 TCATGTATTCTATATCAACGTAGCTGTGATCTATTCTTAGGAGTACCATTCAACATTGCT 134086 ||||||||| | |||||| | |||||| || ||||||| ||||| ||||||||| Sbjct 17520 TCATGTATTATGTATCAAAGATCTTGTGATTTAGGACTAGGAGTTCCATTTAACATTGCT 17579 Query 134087 TCATATTCATTACTAACTCATATGTTAGCACAAGTTTGTGGGTTAGAAGTTGGTGAGTTT 134146 || ||||| || | || ||||| |||||||||| ||| ||| || | ||| ||| Sbjct 17580 TCTTATTCTATATTTACATATATGATAGCACAAGTATGTAACTTACAACCAGCTGAATTT 17639 Query 134147 GT--ATGGATGGGTGGAGATGTTCACATTTATAAAAATCA 134184 | ||| || | || ||| ||| ||||||| ||||| Sbjct 17640 ATACATGTATTG--GGTAATGCTCATGTTTATAATAATCA 17677 >seq622 Length=21720 Score = 89.7 bits (98), Expect = 1e-12 Identities = 282/427 (66%), Gaps = 15/427 (4%) Strand=Plus/Plus Query 150358 AATTCAGATTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGT 150417 ||| || ||| | ||| | | ||| ||||| ||| ||| | || || |||||||| Sbjct 1519 AATACAAATTTTATCTAGAAGAACAAAAAATAATCCAATATTATTAGGAGATCCAGGTGT 1578 Query 150418 TGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGA 150477 |||||||||| ||| ||||| || || ||| | || | | || ||||| || || Sbjct 1579 TGGTAAAACAGCAATAGTTGAGGGTTTGGCAATAAAAATTGTACAAGGAGATGTGCCTGA 1638 Query 150478 TTCTATGAAAGATGTTGAAA--TTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACT 150535 |||| | |||| | |||| | | ||||| ||||| |||| | ||||||| | Sbjct 1639 TTCTTTAAAAG--GAAGAAAATTAGTATCTTTAGATATGTCATCATTAATTGCTGGTGCA 1696 Query 150536 AAGTATCGTGGTGAATTCGAAGAACGTGTAGA--CAATTTGCTACAAGAACTAAAAGAAC 150593 || ||| | ||||| || ||||| | || | | |||| || ||||| | |||| Sbjct 1697 AAATATAGAGGTGATTTTGAAGAGAGGTTAAAATCTATTT--TAAAAGAAATTCAAGATT 1754 Query 150594 GCGATG---ATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGA 150650 || | | || || |||| || ||||| || ||||| || | ||||||||||| | Sbjct 1755 CAGAAGGACAGGTAGTTATGTTTATAGATGAGATACATACAGTTGTCGGTGCTGGTGC-A 1813 Query 150651 CTGGC-GGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAA 150709 | || | ||| | || ||| | ||||| |||||||| || | | || ||| Sbjct 1814 GTAGCAGAAGGTGCATTAGATGCAGGTAATATATTAAAACCATTATTAGCAAGAGGAGAA 1873 Query 150710 ATTCG-TGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGC 150768 | | ||| ||||||||||| || ||||||| | || || ||||||||| Sbjct 1874 TTAAGATGT-ATCGGTGCAACTACTGTTAGTGAATATAGACAATTTATAGAAAAAGATAA 1932 Query 150769 AGCACTA 150775 |||| || Sbjct 1933 AGCATTA 1939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147506781184126