Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq214 127 2e-24 seq5639 91.5 1e-13 >seq214 Length=8422 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||||||||||||||| || |||||||| || || ||||| || Sbjct 7153 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 7094 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || |||||| || ||||||||| | || || ||| Sbjct 7093 GATACTATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAGGGAATTCCTCCTGACCAA 7034 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | || ||||| || |||||||| |||||| || ||| | | |||||||| Sbjct 7033 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAAT 6974 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||||||||| ||| | || | || ||||||||| ||||||| || Sbjct 6973 ATTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGGTAT 6924 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||||||||||||||| || |||||||| || || ||||| || Sbjct 6925 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 6866 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || || |||| || || ||||| ||| | || ||||| Sbjct 6865 GATACTATTGAAAATGTTAAAGCTAAAATTCAA-GATAAAGAAGGAATCCCTCCTGATCA 6807 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| ||| | || ||||| || |||||||| |||||| || ||| | | |||||||| Sbjct 6806 ACAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAA 6747 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||||||||| ||| | || | || ||||||||| ||||||| || Sbjct 6746 TATTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGGTAT 6696 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||||||||||||||| || || || || || || ||||| || Sbjct 6697 ATGCAGATTTTTGTAAAAACATTAACTGGAAAGACTATAACTCTTGATGTAGAACCATCC 6638 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || || |||| || || ||||| ||| | || || || Sbjct 6637 GATACTATTGAAAATGTTAAAGCTAAAATTCAA-GATAAAGAAGGAATTCCTCCTGACCA 6579 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| ||| | || ||||| || |||||||| |||||| || ||| | | || ||||| Sbjct 6578 ACAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGACTATAA 6519 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||||||||||||||| || | || | || ||||||||| ||||||| Sbjct 6518 CATTCAAAAAGAATCAACCTTACATCTAGTTTTAAGATTAAGAGGAGG 6471 Score = 100 bits (110), Expect = 2e-16 Identities = 114/152 (75%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 28632 AAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCG 28691 |||| |||| || || ||||| ||| | || |||||||| ||| | || ||||| Sbjct 7302 AAGCTAAAATTCAA-GATAAAGAAGGAATTCCTCCTGATCAACAAAGATTAATTTTTGCT 7244 Query 28692 GGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACT 28751 || |||||||| |||||| || ||| | | |||||||| |||||||||||||| ||| Sbjct 7243 GGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAATATTCAAAAAGAATCAACT 7184 Query 28752 CTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 | || | || ||||||||| ||||||| || Sbjct 7183 TTACATTTAGTTTTAAGATTAAGAGGAGGTAT 7152 >seq5639 Length=3794 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 ||||||||||| ||||||||||||||||| || ||||| || || || ||||| Sbjct 1053 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCA 994 Query 28611 TCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | || | || || |||| || || ||||| ||| | || || Sbjct 993 TCTGACACTATTGAAAATGTTAAAGCTAAAATTCAA-GATAAAGAAGGAATTCCTCCTGA 935 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 |||||| ||| | || ||||| || ||||| || |||||| | ||| | | || || Sbjct 934 TCAACAAAGATTAATTTTTGCTGGAAAACAGTTAGAAGATGGCAGAACATTATCTGACTA 875 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| ||||||||||| || || | || ||||| || Sbjct 874 TAATATTCAAAAAGAGTCAACCTTACATTTGGTAATA 838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425375315060373