Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_020198.1 Length=36947 Score E Sequences producing significant alignments: (Bits) Value seq2106 158 3e-34 >seq2106 Length=2500 Score = 158 bits (174), Expect = 3e-34 Identities = 346/508 (68%), Gaps = 15/508 (3%) Strand=Plus/Plus Query 17035 GCCGCTATCGAGTACCTGGAGCGCAAGGGATTCGCCACTACTTGGAACTGGCACGA--TG 17092 ||||| |||| ||||| ||| |||||| | | ||| ||||||||||| || || Sbjct 1710 GCCGCGATCGCCTACCTCCAGCACAAGGGCTACAAGCTTACCTGGAACTGGCAGGAGATG 1769 Query 17093 TTG-ACGCGGCCACCCACGCCCGTGCTCTGACCGTTGCCAGAGCAGCACGCCTGGACGTG 17151 || ||| ||| ||||| || || | ||| |||| | | || || ||| ||||| Sbjct 1770 CTGGACGATGCC---CACGCACGGGCCTTTACCATTGCGAAGSCGGCGCGGCTG-ACGTG 1825 Query 17152 CTCCAGGACATTCGCAACGCCCTGGTCGAGAACCTGGAGCGCGGCGAGACGCTACGAGAT 17211 | ||||||||||| || ||||| | || || | |||| | ||||| || Sbjct 1826 GTGCAGGACATTCGGAATGCCCTYGACGTCGCGCTCCGCCACGGCCAAACGCTCAAGGAC 1885 Query 17212 TTCAAGCGCAACCTGCGGCCGACCCTGGAGGCGAAGGGCTGGTGGGGTCGCCAGGTGGTA 17271 ||| | ||| || ||| || ||| | || |||||||||||||| ||| | | Sbjct 1886 TTCCAAAAAAACTTGAAGCCCACGCTGCAAGCCAAGGGCTGGTGGGGCAAACAGATCATC 1945 Query 17272 GTCG-CGCCGGATGGAGGCGCCGAGGTCGCTCAACTGGGCAGCCCGCGCCGCCTGGATAC 17330 || | || || ||| |||||||||| | ||||||||||| | || |||| ||| Sbjct 1946 GTTGACGGCGCCGGGAWTS-CCGAGGTCGCCCSGCTGGGCAGCCCATGGCGGCTGGCTAC 2004 Query 17331 CATTTACCAGACCAACATGCAGTCGGCGTATATGGCAGGGCGTTACGCGGC--TGCCTAC 17388 || |||| ||| ||| |||| || || | ||||| | | |||| | || | | Sbjct 2005 RATCTACCGGACGAACCTGCAATCCGCCTTCATGGCGGCGAATTACCAAGAAATGGC--C 2062 Query 17389 GAGGCCAGGGAAACCCACCCTTACTGGATGTATGTAGCGGTGATGGACGGCGTTACCCGA 17448 || |||| ||| | |||||| || ||| || || |||||| |||||||| ||||| Sbjct 2063 GAAGCCACGGACAGCCACCCCTATTGGCAATACGTCGCGGTGCTGGACGGCCGCACCCGG 2122 Query 17449 CCCAGCCATGCCGCCCTGCATGGGAAGGTCTTCCGCTGGGACGATCCAATCTGGCAGCAC 17508 |||||||| ||| || | || || |||||| |||||||| |||||| | ||| Sbjct 2123 CCCAGCCACCGGGCCATGAACGGCCGAGTGTTCCGCCATGACGATCCCATCTGGAA-CAC 2181 Query 17509 -ATCACCCCGCCCAATGGCTACAACTGC 17535 ||| ||||||||||||| ||||||| Sbjct 2182 GATCTGGCCGCCCAATGGCTTCAACTGC 2209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118100823743646