Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_020200.1 Length=36429 Score E Sequences producing significant alignments: (Bits) Value seq2106 165 2e-36 seq4510 123 6e-24 >seq2106 Length=2500 Score = 165 bits (182), Expect = 2e-36 Identities = 345/505 (68%), Gaps = 9/505 (2%) Strand=Plus/Plus Query 15658 GCCGCCATCGAGTACCTGGAGCGCAAGGGCTTCGCGATCACCTGGAACTGGCATGACGTT 15717 ||||| |||| ||||| ||| |||||||| | | | |||||||||||||| || | | Sbjct 1710 GCCGCGATCGCCTACCTCCAGCACAAGGGCTACAAGCTTACCTGGAACTGGCAGGA-GAT 1768 Query 15718 GACGCGGCCA--CCCACGCCCGCGCTCTGACCGTTGCCAGAGCAGCACGCCTGGACGTGC 15775 | | | | | ||||||| || || | ||| |||| | | || || ||| ||||| Sbjct 1769 GCTG-GACGATGCCCACGCACGGGCCTTTACCATTGCGAAGSCGGCGCGGCTG-ACGTGG 1826 Query 15776 TCCAGGACATTCGCGACGCCCTGGTCGAGAACCTGGAGCGCGGCGAGACGCTACGAGACT 15835 | ||||||||||| | ||||| | || || | |||| | ||||| |||| Sbjct 1827 TGCAGGACATTCGGAATGCCCTYGACGTCGCGCTCCGCCACGGCCAAACGCTCAAGGACT 1886 Query 15836 TCAAGCGAAACCTGCGGCCGACCCTGGAGGCGAAAGGCTGGTGGGGTCGCCAGGTGGTAG 15895 || | |||| || ||| || ||| | || || ||||||||||| ||| | | | Sbjct 1887 TCCAAAAAAACTTGAAGCCCACGCTGCAAGCCAAGGGCTGGTGGGGCAAACAGATCATCG 1946 Query 15896 TCG-CGCCAGATGGCGGCGCCGAGGTTGCACAACTGGGCAGCCCGCGCCGCCTGGATACC 15954 | | || | | || ||||||| || | ||||||||||| | || |||| ||| Sbjct 1947 TTGACGGC-GCCGGGAWTSCCGAGGTCGCCCSGCTGGGCAGCCCATGGCGGCTGGCTACR 2005 Query 15955 ATCTACCAGACCAACATGCAGTCGGCCTACATGGCAGGGCGCTACGCGGCCGCCTACGAA 16014 ||||||| ||| ||| |||| || |||| |||||| | | ||| | |||| Sbjct 2006 ATCTACCGGACGAACCTGCAATCCGCCTTCATGGCGGCGAATTACCAAGAAATGGCCGAA 2065 Query 16015 GCCAGGGAAACCCACCCTTACTGGATGTATGTGGCGGTGATGGATGGCGTTACCCGGGCC 16074 |||| ||| | |||||| || ||| || || |||||| |||| ||| |||||| || Sbjct 2066 GCCACGGACAGCCACCCCTATTGGCAATACGTCGCGGTGCTGGACGGCCGCACCCGGCCC 2125 Query 16075 AGCCATGCCGCCCTGCATGGGAAAGTGTTCAGGTGGGACGATCCGATCTGGCAGCAC-AT 16133 ||||| ||| || | || ||||||| | |||||||| |||||| | ||| || Sbjct 2126 AGCCACCGGGCCATGAACGGCCGAGTGTTCCGCCATGACGATCCCATCTGGAA-CACGAT 2184 Query 16134 CACCCCGCCCAATGGCTACAACTGC 16158 | ||||||||||||| ||||||| Sbjct 2185 CTGGCCGCCCAATGGCTTCAACTGC 2209 >seq4510 Length=976 Score = 123 bits (136), Expect = 6e-24 Identities = 141/187 (75%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 24350 GCCCTGGTCCAGTTCGGCCAGGCTCTGGCGTCGGGCGTTCTGCGCGGTGAGGAATTCAAC 24409 ||| || | |||||||||||||| ||||||||||| || |||||||| ||||| |||||| Sbjct 713 GCCTTGCTGCAGTTCGGCCAGGCGCTGGCGTCGGGTGTGCTGCGCGGCGAGGAGTTCAAC 654 Query 24410 TCGGTCAGCGAGCA-GGCGCCCGCGCTGCTGAAAGCAATTGCCGATGGCCTCAACGTCAA 24468 |||||| |||| | || |||| ||| | | || | ||||| ||||| ||||| Sbjct 653 TCGGTCGTCGAGAACAGCCCCCG-TCTGGCGCAGGCCTTGGCCGACGGCCTGAACGTGCC 595 Query 24469 TATCGGCGAGCTTCGCAAGATGGCGAACGAAGGCCAGTTGACAGCTGATGTCCTGGTGGA 24528 ||||| ||| |||||| |||| | ||||| ||| | || || || || ||||| | Sbjct 594 CATCGGGCGGCTGCGCAAGCTGGCCGAGGAAGGACAGCTCACCGCCGACGTGGTGGTGAA 535 Query 24529 CGCCTTG 24535 ||||||| Sbjct 534 CGCCTTG 528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116443335686554