Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq8 398 4e-106 >seq8 Length=6382 Score = 398 bits (440), Expect = 4e-106 Identities = 1005/1503 (67%), Gaps = 74/1503 (5%) Strand=Plus/Plus Query 25059 ATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATG 25118 ||||||| || ||||||||||||| || ||||| ||||| || ||||||||||| || Sbjct 3580 ATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGTTGAAGCTGTTGGCATAGGTG 3639 Query 25119 CTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAAT 25178 ||| | || |||||||| || |||| || || | || ||||||| |||||||| Sbjct 3640 CTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTTTTAATAAATCCCAAT 3699 Query 25179 CTAAAT---TATTATCTAACTCGATATCGTTATCATATAAATCAAATTGTAACAATCC-- 25233 | ||| ||||||||| | | || || ||| ||||||||||| | || Sbjct 3700 CCCAATATTTATTATCTACTTTTACATTC----CACATA--TCAAATTGTAATATCCCTT 3753 Query 25234 -ACTTGCTGCAGGCGA--TTGATCAAAAGTTGAATATTTACCTTTTGTTATTGCCATATC 25290 |||||||| ||| | || || | | | |||| || | | || ||| | || Sbjct 3754 GACTTGCTG--GGCTACCTTTAT---ATGATTCATATGGTCCATGTATTTGTGCTAATTC 3808 Query 25291 TTTTGATTGCTCTAACGCAGCATAATACATATTTTCAAAAATCGCTTTGTTTAAAAACTT 25350 || ||||| || ||||||||||| ||||||| || ||| ||||| || Sbjct 3809 AACAGACATTTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTATTTAATTCTTT 3868 Query 25351 AGCTTTTTCTCCATCGAAAGCAATTTCCATTAAGGCG--AACGTATCTGCTAATCCCTGA 25408 ||||| || || | | | | | | || || || || ||||||||||| || Sbjct 3869 AGCTTCATCAGATTCATATGGATAT--CTTAAAAGCATAAATGTGTCTGCTAATCCTTGT 3926 Query 25409 ACTCCTAATCCAACTGGACGATGTTTATTATTACTTATCTCAGTTTCTGATGTTGGATAG 25468 ||||||| ||||| || |||||| | ||||| | | |||| |||| |||| || Sbjct 3927 ACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTGGGTAA 3986 Query 25469 AAATTTGTATCGATCACATTATCTAGATTCTTTATGGCAAGCTTTGTG-TATTTTCTCAA 25527 ||||| | || || | ||||||| ||| | | || || || ||| | | || Sbjct 3987 TAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATAT-AA 4045 Query 25528 CTCAATAAAGTCAAAATAAGGCTTATCGTTTATATCTCTTTTTACAAATTTAGATAAAGC 25587 | |||| ||||| | | ||| | ||||| | |||||||| |||| || Sbjct 4046 TTTTTTAAAATCAAATT---------CTTTTTTTTCTCTATCAACAAATTTGCATAATGC 4096 Query 25588 GATTGATGCTAAATTACAAACAGCTTGTTCTTTCCCGTCA-GAATATTCATTGATCTCGA 25646 ||||| || ||||||||||||||| ||| | | || | | ||||||| | || || Sbjct 4097 AATTGAAGCCAAATTACAAACAGCTACTTCAT-CAGGTGATGTATATTCAATTATTTCAC 4155 Query 25647 TACATAAGTTGCTAGATTTGATTACTCCATAATTCTTTTGATTATTGCATGTATTGACAA 25706 |||||| || ||| |||| ||| ||| |||| ||||||||| | ||| ||| Sbjct 4156 AACATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATT-ACAT 4214 Query 25707 T-ATCTTTATATCCTAAATATGGCGTTCCTGTTTCAATTTGAGATACTAAAATTTTCTCC 25765 |||||||||| | |||||| || ||||| |||||| | |||||| | Sbjct 4215 GCATCTTTATATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAATAGCAAAC 4274 Query 25766 CAAAGTTCTCTCGCTTTTAC---TTTCTTTACGAAGTTACCATCAGAAACAGCTCTTTCG 25822 || | ||| || || ||| ||| | || || | || || | || Sbjct 4275 CATAAATCTTGTGCAAGAACAGTTTTTTTTCCTAAATTTTCTTCTT---CATATTTTGTA 4331 Query 25823 TAAAGTTCAACAAATTCTTGATTTATTTTCTCAGAGAAAAGTTTGCCATATTTATTGAGA 25882 || | || ||||||||| | | || || || | || | || | Sbjct 4332 TATAATTTTTCAAATTCTTCAC-------CCCA------AGATTCACTTAACCCTGGACA 4378 Query 25883 ATAATATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAA 25942 | || | ||||| | || ||||| ||||| | ||| | | |||||||||| Sbjct 4379 TTCAT--TAGGACACATTAGTGTCCAATTTCTATTTTCTTTTACTCTTTTCATAAATAAA 4436 Query 25943 TCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTC 26002 || || | ||| || ||||||||||||||||| ||||| | ||||||||| || ||||| Sbjct 4437 TCAGGTACCCAAATAGCATAAAATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTT 4496 Query 26003 TTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAA 26062 ||| ||| |||||| || ||||||||||| || ||||||||||||| ||| | ||||||| Sbjct 4497 TTTCTTAAATCTAAAAATTCAAAAATATCAGAATGCCATGGTTCTATATATACAGCAAAA 4556 Query 26063 CTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTC 26122 |||||||||||||||||||||||||||||| ||||| || || ||||| |||||| | Sbjct 4557 GAACCTTTTCTTTTTCCTCCACCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTT 4616 Query 26123 AACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCT-TGGATCCTGTCGA 26181 |||||||||||||| ||| |||| | || || || | ||| | | || ||||| Sbjct 4617 AACATTGGAACTAAACCATTTGATATACCATTAGTTCCTCTAATATAAGAATTCTGTC-C 4675 Query 26182 TCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATC 26241 ||| ||||| || || || || || || || || ||| ||| ||||| | Sbjct 4676 TCTTATATCTTGTACAGCAACTCCTATACCTCCCGCGGTTTTACTAATTAAAGCACATTG 4735 Query 26242 TGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGA 26301 | | ||| || || || |||| || ||| |||||| ||||| ||| ||||| Sbjct 4736 TTTTAATGTTTCAAATATACCTTCGATAGAATCTGATTTCATAGATAATAGAAAGCAAGA 4795 Query 26302 AGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATA 26361 || | ||| | | | | ||||||||||||||||||||| || |||||||| || |||| Sbjct 4796 TGACATTTGTGGACGTGGTGTTCCTGAATTAAATAATGTAGGAGTAGCATGTGTGAAATA 4855 Query 26362 TCCTTC----AC-TCAAAGCTGTATAAGTTTCAAGAACTTCATCGATATTGTAATTACTA 26416 | ||| || | ||| || ||| ||||| | | ||| || | || | || Sbjct 4856 T--TTCTGAGACATTAAA--TG-ATATGTTTCTAAAGCTTTTTCAAGATCATCTATATGT 4910 Query 26417 ACTTCAATAGCTGTTCTTAACCACATATATTGAGGTCGTTCAATTACATTATTTTCCGCA 26476 | | |||| | | ||| | | | || ||| || |||||||| | ||||| | | Sbjct 4911 ATTCCAATTGATACTCTCATTAATAAATGTTGTGGACGTTCAATAATTTTATTGT--TAA 4968 Query 26477 TCTCTAATCAAATAAGATTTTTCTAAAGTTTTCAATCCAAAATAATCATGATTGAAATCT 26536 | |||| ||||| ||| ||||||| ||||| |||||||||||||||| || |||||| Sbjct 4969 TTCGTAAT-AAATATGATCTTTCTAATGTTTTGAATCCAAAATAATCATAGTTAAAATCT 5027 Query 26537 CTT 26539 ||| Sbjct 5028 CTT 5030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253022461718525