Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq1326 154 2e-32 >seq1326 Length=11127 Score = 154 bits (170), Expect = 2e-32 Identities = 481/736 (65%), Gaps = 24/736 (3%) Strand=Plus/Minus Query 47796 AATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATC 47855 |||||||||||| |||| || |||||| | |||||| | || || | |||||||| Sbjct 4385 AATAACAAAATCGCTAGGTGTTTTTTGTTGTAACATTAAATATATTGCATATACATAATC 4326 Query 47856 TCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAA--ACAGTCTTGC 47913 | | ||||| ||||| || | || || ||||| |||||||| || ||| ||||| ||| Sbjct 4325 TTTTGCATGACCCCAATCTCTAAATGTATCAATATTTCCTA-ATGTAATAACAGT-TTGA 4268 Query 47914 TTACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCA 47973 | || | | ||| | || || ||||||| || || ||||| ||||||||| Sbjct 4267 ATTTTTTTAAATATTTTTGCTATCCCTTTTGTAATTTTTTTTGTAACAAATGTTTCACCA 4208 Query 47974 CGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCA 48033 ||||||||| ||||||||||| | |||||| || | |||| |||| ||| Sbjct 4207 CGTCTTGGACTCTCATGATTAAATAATATACCATTAACACAAAACATATTATATGCTTCT 4148 Query 48034 CGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGA 48093 | ||| || ||| ||| | | | ||| | |||||| | ||||||||| ||| |||| Sbjct 4147 CTATAATTTTTTGTTATATAATGGCTATATAATTTTGCTATACCATAAGGTGAAACTGGA 4088 Query 48094 TAGAAAGGTGTGGTCTCTGTCTG---TGGAGTCTCTTGCA---CCTTACCATAAAGTTCA 48147 || ||||| | || | || | || | ||| | |||||||| | ||| Sbjct 4087 CTAAATGGTGTATTTTCATTATGACATTGACT---TTGAATATTATTACCATATAATTCT 4031 Query 48148 CTGGTGGATGCTTGAT-AGATACGAACCCTATCTTCCATCTCAAGCAAACGGACTGCCTC 48206 || || || | || | || || ||| | || | || | || || Sbjct 4030 GATGTTGAAGCATTATAAAATTTGA----TATTATTAATTTTTGATAATTTAATTGATTC 3975 Query 48207 AAGCACTCTCAGGGTGCCTATGGCATCTGT---CTGACCAGTATACTCGGGCATCTCAAA 48263 | | ||| || || ||||| | |||| || | ||||| || || | ||||| Sbjct 3974 TAATATTCTTAGTGTACCTAT---AGCTGTACATTGTGCTGTATATTCAGGTAATTCAAA 3918 Query 48264 CGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGTTGAACCTGCTG 48323 || ||||||||||| ||||| | | |||||| || |||| ||||| | | Sbjct 3917 ACTTACTTTTACATGACTTTGTGCAGCTAAATTATATATTTCATTTGGTTTTATTTTAGT 3858 Query 48324 AATAACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAATTTTAATTGATC 48383 || | | || ||| || || ||| || |||||||| || ||||||| || Sbjct 3857 TATTAAAGAAAATATATTACTATTATCAAGTAAATCACCATAATGTAAATTTAATTTTTC 3798 Query 48384 ATAAATGTGATCAATTCTATGTGTATTAATTAAAGAAGCCCGACGGACAATACCATGAAC 48443 | | || ||||| ||||| | |||||||| | | | | | | || |||||||| Sbjct 3797 AAATATATGATCTATTCTTTTTGTATTAAATGTACTACATCTCCTAATAACCCCATGAAC 3738 Query 48444 CTCATACCCCTTTTCAAGAAGAAGTTCTGCTAAGTATGAACCATCTTGTCCTGTAATACC 48503 ||||| || || || | ||| | ||| ||| ||||| ||||| |||||||| ||||| Sbjct 3737 TTCATATCCTTTATCTAAAAGCAATTCGCTTAAATATGACCCATCCTGTCCTGTTATACC 3678 Query 48504 AGTGATTAAAGCAACT 48519 | ||||| |||||| Sbjct 3677 AAATATTAATGCAACT 3662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665447091666840