Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq8 152 6e-32 >seq8 Length=6382 Score = 152 bits (168), Expect = 6e-32 Identities = 719/1129 (64%), Gaps = 16/1129 (1%) Strand=Plus/Minus Query 75470 CATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATT 75529 || ||| | |||| | || ||| |||| | || || |||||| |||| ||||| | Sbjct 4687 CAAGATATAAGAGGACAGAATTCTTATATTAGAGGAACTAATGGTATATCAAATGGTTTA 4628 Query 75530 ATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGTC-- 75587 |||||||| | | || ||||| | ||||| | |||||| |||||| || | Sbjct 4627 GTTCCAATGTTAAGAGTTTTTAATGATACAGCTAGATATGTAGATCAAGGTGGAGGAAAA 4568 Query 75588 -GCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTT 75646 | || || || | || || || | |||||||||||| | ||||| | || || | Sbjct 4567 AGAAAAGGTTCTTTTGCTGTATATATAGAACCATGGCATTCTGATATTTTTGAATTTTTA 4508 Query 75647 GAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTG 75706 || ||| || || || ||| | ||||| | ||||||| | |||| | | Sbjct 4507 GATTTAAGAAAAAATCATGGTAAAGAAGAATTAAGAGCTAGAGATTTATTTTATGCTATT 4448 Query 75707 TGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGT 75766 ||| | || || | || ||||| | || | || | | | ||| | || | ||| Sbjct 4447 TGGGTACCTGATTTATTTATGAAAAGAGTAAAAGAAAATAGAAATTGGACACTAATGTGT 4388 Query 75767 CCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACA 75826 || | | ||||| | || | |||||| || |||||| | || ||| Sbjct 4387 CCTAATGAATGTCCAGGGTTAAGTGAATCTTGGGGTGAAGAATTTGAAAAATTATATACA 4328 Query 75827 AAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCT 75886 || |||||||| || | || || ||||| | || ||| | ||| ||| Sbjct 4327 AAATATGAAGAAGAAAATTTAGGAAAAAAAACTGTTCTTGCACAAGATTTATGGTTTGCT 4268 Query 75887 ATTCT-CAAA-TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTA 75944 ||| | |||| ||| | | || ||||| |||||||||| | || || ||||| |||| Sbjct 4267 ATTTTACAAAGTCAAATA--GAAACTGGTGTACCATATATGTTATATAAAGATGCATGTA 4210 Query 75945 ACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAA 76004 | || ||| ||||| ||||| |||||||| || | ||| | || |||| Sbjct 4209 ATTCTAAATCTAATCAAAAAAATTTAGGAACAATTAAATGTAGTAATTTATGTTGTGAAA 4150 Query 76005 TTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCT-T 76063 | | || || ||| ||||| |||||||| |||||||| ||||| || | | Sbjct 4149 TAATTGAATATACATCACCTGATGAAGTAGCTGTTTGTAATTTGGCTTCAATTGCATTAT 4090 Query 76064 CCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACA 76123 |||| | ||| || ||| | ||||||| | ||||| | |||| || || Sbjct 4089 GCAAATT-TGTTGATAGAGAAAAAAAAGAATTTGATTTTAAAAAATTATATGATATTACT 4031 Query 76124 AAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACT 76183 || ||| |||| | |||| || | | | ||||| ||||||| ||| || || | Sbjct 4030 AAAATTATTACTAGAAATTTAGATAAAATTATTGAAAGAAATTATTACCCAATTAAAGAA 3971 Query 76184 GCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGAT 76243 || ||| || |||| |||| |||||||||| | || || ||||| | || || Sbjct 3970 GCTGAAAAATCAAATAAAAGACATCGACCTATTGGAATAGGAGTACAAGGATTAGCAGAC 3911 Query 76244 GTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGT 76303 |||||| | | | || ||| ||| || |||||||| || || | ||| | Sbjct 3910 ACATTTATGCTTTTAAGATATCCATATGAATCTGATGAAGCTAAAGAATTAAATAAAAGA 3851 Query 76304 ATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAA 76363 || |||||||| |||||| | ||| | | || | | |||||| || || || Sbjct 3850 ATATTTGAAACAATGTATTATGCAGCTTTAGAAATGTCTGTTGAATTAGCACAAATACAT 3791 Query 76364 GGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATG 76423 || | ||||| ||| | | ||| || || |||||| | | || ||||||||| Sbjct 3790 GGACCATATGAATCATATAAAGGTAGCCCAGCAAGTCAAGGGATATTACAATTTGATATG 3731 Query 76424 TGGGAAGGTGAAACCA-AGCTCAACTA---CGACTGGGATGTTCTCAAGGAACGCATCAA 76479 | |||| || ||| | | || || || |||||| || | || || | || Sbjct 3730 T-GGAATGTAAAAGTAGATAATAAATATTGGGATTGGGAT-TTATTAAAAAAAAAAATAA 3673 Query 76480 GGA-GAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCAC 76538 | | | | || | | || |||| | | ||||| ||||||||||| || || ||| Sbjct 3672 GTATGCATGGATTAAGAAATTCTCTTCTTTTAGCACCTATGCCAACAGCTTCAACTTCAC 3613 Query 76539 AAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTA 76587 |||| ||||| |||||||||| || |||||||| |||| |||||||| Sbjct 3612 AAATTTTGGGAAATAATGAATCATTCGAACCATATACAAGTAACATCTA 3564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596527191358560