Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq89 282 6e-71 seq214 168 1e-36 seq5639 158 2e-33 >seq89 Length=9661 Score = 282 bits (312), Expect = 6e-71 Identities = 573/841 (68%), Gaps = 17/841 (2%) Strand=Plus/Minus Query 17865 TTTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAA 17923 ||||| || ||| | ||| |||| || ||||||||||| ||||||| || ||||||||| Sbjct 1673 TTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAA 1614 Query 17924 TTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAAT 17983 | ||| ||| || || || | | | | || ||| | ||| | |||| Sbjct 1613 TCCATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAAACATTCTAAT 1554 Query 17984 AATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGT 18043 |||||||| || |||||||| | |||||| ||||| | ||||||| || | || Sbjct 1553 AATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCATTCCAATTAAA 1494 Query 18044 CTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATG 18103 |||||| || ||| ||||||| | | |||| ||||| | ||||| | ||| Sbjct 1493 TCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTATA 1434 Query 18104 TTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAA--TAAACACG 18161 ||| || | || ||| |||||||| || | | || | ||||| |||||| Sbjct 1433 TTTTGAACAACATTTTCTGGTAATTTATT--TTCT---AATAAACTATAAATTAAACAGT 1379 Query 18162 CAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGG 18221 ||||||||| |||||||| ||||| || |||||||| |||||||| ||||| || Sbjct 1378 TAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCAT 1319 Query 18222 GCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATAC 18281 | | | || | |||||| | |||||| || | ||||| | | ||| ||||| | Sbjct 1318 GTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATTC 1259 Query 18282 CCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGT-ATC 18340 | || || || || |||| | |||||| |||||| | |||| | ||| | ||| Sbjct 1258 CTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAA--GAATTTGTA--TCATTTATC 1203 Query 18341 CATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAAC 18400 ||||| |||||| | ||| ||| |||||| | || ||||||| ||| Sbjct 1202 CATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAATAGCATGAAAT 1143 Query 18401 AAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCA 18460 |||| | ||||||| |||||| |||||| | || ||||| ||| ||| ||||| Sbjct 1142 AAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTTTCA 1083 Query 18461 GAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGA 18520 |||||||| |||| | |||||| |||||| |||||| | | || || | || Sbjct 1082 GAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATAATTTCT 1023 Query 18521 ATCTCGCTATAAAATCTTTCTA-CCAAATTCTCATTAACTATACCGTCAGCAGATGCGAA 18579 | || || ||||| || ||| ||||||| || || || || ||| | ||| || Sbjct 1022 ACTTCTCT-TAAAAATTTACTAGCCAAATTTTCTAATACAATTCCATCACTTGCTGCAAA 964 Query 18580 AAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTC-CATTCAT 18638 |||||| ||||||| ||| || |||||||||||||| | || | ||| ||| | || | Sbjct 963 AAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTA-ATTTTTCAAAATCTT 905 Query 18639 CTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGT 18698 | ||| | |||| ||||| |||||| | ||||||||| || | ||| || | ||||| Sbjct 904 TCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTTTGT 845 Query 18699 A 18699 | Sbjct 844 A 844 >seq214 Length=8422 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | |||||||| ||||||||||| || || | || || ||| || Sbjct 6925 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 6866 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || ||| |||||| |||||||||||||| || ||||| || ||| Sbjct 6865 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATCCCTCCTGATCAA 6806 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| |||| ||| || || || | |||||| ||||| |||| ||||||||| Sbjct 6805 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAAT 6746 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || | |||||||| |||||||||||||| ||| Sbjct 6745 ATTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGGT 6698 Score = 163 bits (180), Expect = 4e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | |||||||| ||||||||||| || || | || || ||| || Sbjct 7153 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 7094 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || ||| |||||| ||||||||||| || || ||||| || ||| Sbjct 7093 GATACTATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAGGGAATTCCTCCTGACCAA 7034 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| |||| ||| || || || | |||||| ||||| |||| ||||||||| Sbjct 7033 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAAT 6974 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || | |||||||| |||||||||||||| ||| Sbjct 6973 ATTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGGT 6926 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | |||||||| |||||||| ||||| || | || || ||| || Sbjct 6697 ATGCAGATTTTTGTAAAAACATTAACTGGAAAGACTATAACTCTTGATGTAGAACCATCC 6638 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || ||| |||||| |||||||||||||| || ||||| || ||| Sbjct 6637 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATTCCTCCTGACCAA 6578 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| |||| ||| || || || | |||||| ||||| |||| || ||||| Sbjct 6577 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGACTATAAC 6518 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || | ||| |||| |||||||||||||| ||| Sbjct 6517 ATTCAAAAAGAATCAACCTTACATCTAGTTTTAAGATTAAGAGGAGGT 6470 Score = 147 bits (162), Expect = 3e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 155850 GGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAA 155909 ||||||||||| || | || || || ||||||| |||| ||| || ||| |||| Sbjct 7354 GGAAAAACTATAACTCTTGATGTAGAGCCATCTGATACTATTGAAAATGTTAAAGCTAAA 7295 Query 155910 ATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAG 155969 || |||||||||||||| || ||||| || ||||||||||| |||| ||| || || || Sbjct 7294 ATTCAAGATAAAGAAGGAATTCCTCCTGATCAACAAAGATTAATTTTTGCTGGGAAACAA 7235 Query 155970 CTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTA 156029 | |||||| ||||| |||| ||||||||||| ||||| | || | |||||| Sbjct 7234 TTAGAAGATGGTAGAACACTATCTGATTATAATATTCAAAAAGAATCAACTTTACATTTA 7175 Query 156030 GTGTTAAGATTAAGAGGCGGT 156050 || |||||||||||||| ||| Sbjct 7174 GTTTTAAGATTAAGAGGAGGT 7154 >seq5639 Length=3794 Score = 158 bits (174), Expect = 2e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| ||| | |||||||| || |||||||| || || | || || ||| Sbjct 1053 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCA 994 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | |||| ||| || ||| |||||| |||||||||||||| || ||||| || Sbjct 993 TCTGACACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATTCCTCCTGAT 934 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||||||||| |||| ||| || || ||| | |||||| |||||| ||||| || ||| Sbjct 933 CAACAAAGATTAATTTTTGCTGGAAAACAGTTAGAAGATGGCAGAACATTATCTGACTAT 874 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGT 156031 ||||| |||||| | || | ||||| || Sbjct 873 AATATTCAAAAAGAGTCAACCTTACATTTGGT 842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731819973049200