Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq89 370 2e-97 seq214 221 2e-52 seq5639 187 5e-42 seq1573 84.2 4e-11 >seq89 Length=9661 Score = 370 bits (410), Expect = 2e-97 Identities = 563/798 (71%), Gaps = 16/798 (2%) Strand=Plus/Minus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTC 49632 ||| ||| |||||||||| ||| ||| || || ||||| | || | || ||| | Sbjct 1630 CTTGTAAAGATATTAAATCCATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAAC 1571 Query 49633 CTATCAATACATA-TAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCA 49691 | || |||| |||||||||||| || |||||||||| |||||| ||||| | Sbjct 1570 ATCCTAA-ACATTCTAATAATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTT 1512 Query 49692 CAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttct 49751 ||||||| || | ||| | | | ||||| | ||| ||||||| | |||||| ||| Sbjct 1511 GAATTCATTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCA 1452 Query 49752 acagcttgtttaattatcataattatattattttttgataatttatatt-taatatgatt 49810 || |||| ||||| ||| | | | ||||| || |||||||| || ||||| | Sbjct 1451 ACTGCTTCTTTAACTATATTTTGAACAACATTTTCTGGTAATTTATTTTCTAATAAACT- 1393 Query 49811 cgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATT 49870 ||| |||||||| ||||||||||||||||||||| |||||| || |||||||| Sbjct 1392 ---ATAAATTAAACAGTTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATT 1336 Query 49871 ACTAAAAGTTAATCC-TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAAC 49929 |||||| ||||| || || ||| || | | ||||||| |||||| |||| ||||| Sbjct 1335 ACTAAATGTTAAACCATGTAATTTATTTTGT-TTTTTAAACCAAAAAATTGCACAAAAAC 1277 Query 49930 TACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTA 49989 | | | ||| ||||| || || ||||| ||| |||| |||||| || ||| | | Sbjct 1276 TTCCACTAAATAATATTCCTTCTACACATGCATTAGCTACAATTCTTTCTGCAA--AAGA 1219 Query 49990 ATTTATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATAT 50049 |||| | ||| |||||| || |||||| |||||| |||||||||| ||||||| Sbjct 1218 ATTTGT-ATCATTTATCCATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATAT 1160 Query 50050 TTTCTATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTA 50109 |||| ||||| | |||||| | | |||| | |||| Sbjct 1159 TTTCAATAGCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTA 1100 Query 50110 ATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTC 50169 ||||| ||| |||||||||||| | ||| | |||||||||||| |||||||||| | Sbjct 1099 ATAAACTATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTT 1040 Query 50170 TTGCTTCTGAATA--CTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAAT 50227 ||||||| |||| | ||||| || ||| | | ||||| || ||||||| Sbjct 1039 TTGCTTC--AATAATTTCTACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACAAT 982 Query 50228 ACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTT 50287 |||||| |||||| || ||||||||||| | ||| ||||||||||||||||| | || Sbjct 981 TCCATCACTTGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATT 922 Query 50288 TAAATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGA 50347 ||| ||||| || || | |||| | |||||||| | |||||| |||||||||||| Sbjct 921 TAATTTTTCAAAATCTTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGA 862 Query 50348 TGCTACGGATTTTTTATA 50365 ||| | | |||||| || Sbjct 861 AGCTTCAGCTTTTTTGTA 844 >seq214 Length=8422 Score = 221 bits (244), Expect = 2e-52 Identities = 187/230 (81%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | | ||| |||||||||||||| | ||||| |||||||||||| Sbjct 6696 ATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCA 6755 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| ||||| |||| || |||||||| |||||||| |||||||| ||||||||||| Sbjct 6756 GATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGA 6815 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| |||||| ||| ||||| |||| ||| || | |||| Sbjct 6816 GGGATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCT 6875 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| |||||||| |||||||||||||| | ||| |||||||| Sbjct 6876 ACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 6925 Score = 212 bits (234), Expect = 1e-49 Identities = 185/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | | ||| |||||||||||||| | ||||| |||||||||||| Sbjct 6924 ATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCA 6983 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| ||||| |||| || |||||||| |||||||| |||||||| ||||| ||||| Sbjct 6984 GATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGA 7043 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||||||||| |||||| ||| ||||| |||| ||| || | |||| Sbjct 7044 GGAATTCCCTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCT 7103 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| |||||||| |||||||||||||| | ||| |||||||| Sbjct 7104 ACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 7153 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| ||||| | | ||| |||| |||||| || | ||||| || ||||| ||||| Sbjct 6470 ACCTCCTCTTAATCTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGA 6529 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || ||||| |||| || |||||||| |||||||| |||||||| ||||| ||||| || Sbjct 6530 TAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGG 6589 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||||||||||||||| |||||| ||| ||||| |||| ||| || | |||||| Sbjct 6590 AATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTAC 6649 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| || || || |||||||||||||| | ||| |||||||| Sbjct 6650 ATCAAGAGTTATAGTCTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 6697 Score = 178 bits (196), Expect = 3e-39 Identities = 161/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | | ||| |||||||||||||| | ||||| |||||||||||| Sbjct 7152 ATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCA 7211 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| ||||| |||| || |||||||| |||||||| |||||||| ||||||||||| Sbjct 7212 GATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGA 7271 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| |||||| ||| ||||| |||| ||| || | ||| Sbjct 7272 GGAATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGCTCT 7331 Query 192487 ACTTCTAGAGTAATGGTTTTACC 192509 || || ||||| || ||||| || Sbjct 7332 ACATCAAGAGTTATAGTTTTTCC 7354 >seq5639 Length=3794 Score = 187 bits (206), Expect = 5e-42 Identities = 171/216 (79%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 192324 TAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATC 192383 || ||| |||||||| || | |||||| |||||||| ||||||||||||| |||| Sbjct 838 TATTACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATC 897 Query 192384 ATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATC 192443 || || ||||| |||||||| |||||||| ||||||||||| || |||||||||||||| Sbjct 898 TTCTAACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATC 957 Query 192444 TTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGT 192503 ||| |||||| ||| ||||| |||| || || | ||| || || ||||| || || Sbjct 958 TTGAATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGT 1017 Query 192504 TTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| || ||||||||||| | ||| || |||||||| Sbjct 1018 TTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1053 >seq1573 Length=3361 Score = 84.2 bits (92), Expect = 4e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 129708 TAAAATATTTACATAAAATAAAAATAGTACATTGTGATTTAAAACCAGAGAATATATTA 129766 || ||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||| Sbjct 1154 TAGAATATTTACATAAAATAAATATAGTACATAGAGATTTAAAACCAGAAAATATATTA 1096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984408266172450