Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq89 336 4e-87 seq214 212 1e-49 seq5639 176 8e-39 seq1573 84.2 4e-11 >seq89 Length=9661 Score = 336 bits (372), Expect = 4e-87 Identities = 582/844 (69%), Gaps = 22/844 (3%) Strand=Plus/Minus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 ||||| || || | |||| ||||||| || || ||||||||||||| ||| ||||||||| Sbjct 1673 TTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAA 1614 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATA-TAA 38950 | ||| ||| || || ||||| | || | || ||| | | || |||| ||| Sbjct 1613 TCCATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAA-ACATTCTAA 1555 Query 38951 TAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010 ||||||||| || |||||||||| |||||| |||| | ||||||| || | ||| Sbjct 1554 TAATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCATTCCAATTAA 1495 Query 39011 TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat 39070 | | | ||||| | ||| ||||||| | |||||| ||| || |||| ||||| ||| Sbjct 1494 ATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTAT 1435 Query 39071 cataattatattattttttgataatttatatt-taatatgattcgcatataGTAAACATG 39129 | | | ||||| || |||||||| || ||||| | ||| | |||||| Sbjct 1434 ATTTTGAACAACATTTTCTGGTAATTTATTTTCTAATAAACT----ATAAATTAAACAGT 1379 Query 39130 CAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC-T 39188 |||||| ||||||||||| || |||||| || |||||||||||||| ||||| || | Sbjct 1378 TAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCAT 1319 Query 39189 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATA 39248 | ||| || | | ||||||| |||||| |||| |||||| | | ||| ||||| Sbjct 1318 GTAATTTATTTTGT-TTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATT 1260 Query 39249 CCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATT-TATCATCTAAAAT 39307 || || ||||| ||| |||| |||||| || |||| | | || |||||| | || Sbjct 1259 CCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAA-AGAATTTGTATCATTT---AT 1204 Query 39308 CCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 39367 ||| || ||||| |||||| |||||||||| ||||||||||| ||||| | ||| Sbjct 1203 CCATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAATAGCATGAAA 1144 Query 39368 TAA--TTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATT 39425 ||| || || | ||| || Sbjct 1143 TAAATTTAAT--CTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTT 1086 Query 39426 TCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATA- 39484 |||||||||| | ||| | |||||||||||| |||||||||| ||||||| |||| Sbjct 1085 TCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTC--AATAA 1028 Query 39485 -CTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTG 39543 | ||||| || ||| | | ||||| || ||||||| |||||| ||||| Sbjct 1027 TTTCTACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACAATTCCATCACTTGCTG 968 Query 39544 CGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAG 39603 | || ||||||||||||| ||| ||||||||||||||||| | ||||| ||||| || Sbjct 967 CAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTAATTTTTCAAAAT 908 Query 39604 ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTT 39663 || | |||| | |||||||| | |||||| ||||||||| || ||| | | ||||| Sbjct 907 CTTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTT 848 Query 39664 TATA 39667 | || Sbjct 847 TGTA 844 >seq214 Length=8422 Score = 212 bits (234), Expect = 1e-49 Identities = 185/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || ||| |||||||||||||| | ||||| |||||||||||| Sbjct 6696 ATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCA 6755 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| | || | || || |||||||| ||||||||||||||||| ||||| ||||| Sbjct 6756 GATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGA 6815 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||||||||| |||||| ||| ||||| |||||||| || | |||| Sbjct 6816 GGGATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCT 6875 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| |||||||| |||||||||||||| | || |||||||| Sbjct 6876 ACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 6925 Score = 212 bits (234), Expect = 1e-49 Identities = 185/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || ||| |||||||||||||| | ||||| |||||||||||| Sbjct 6924 ATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCA 6983 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| | || | || || |||||||| ||||||||||||||||| ||||||||||| Sbjct 6984 GATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGA 7043 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||||||||| |||||| ||| ||||| |||||||| || | |||| Sbjct 7044 GGAATTCCCTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCT 7103 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| |||||||| |||||||||||||| | || |||||||| Sbjct 7104 ACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 7153 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| ||||| | || ||| |||| |||||| || | ||||| ||| ||||| || || Sbjct 6470 ACCTCCTCTTAATCTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGA 6529 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || | || | || || |||||||| ||||||||||||||||| ||||||||||| || Sbjct 6530 TAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGG 6589 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 ||||||||||||||||| |||||| ||| ||||| |||||||| || | |||||| Sbjct 6590 AATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTAC 6649 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || || || |||||||||||||| | || |||||||| Sbjct 6650 ATCAAGAGTTATAGTCTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 6697 Score = 172 bits (190), Expect = 1e-37 Identities = 160/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || ||| |||||||||||||| | ||||| |||||||||||| Sbjct 7152 ATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCA 7211 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| | || | || || |||||||| ||||||||||||||||| ||||| ||||| Sbjct 7212 GATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGA 7271 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||||||||| |||||| ||| ||||| |||||||| || | ||| Sbjct 7272 GGAATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGCTCT 7331 Query 172020 ACTTCTAGAGTAATGGTTTTACC 172042 || || ||||| || ||||| || Sbjct 7332 ACATCAAGAGTTATAGTTTTTCC 7354 >seq5639 Length=3794 Score = 176 bits (194), Expect = 8e-39 Identities = 177/230 (77%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 171857 TAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTC 171916 || ||| |||||||| || | |||||| ||||||||| || ||||| | || | || Sbjct 838 TATTACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATC 897 Query 171917 ATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATC 171976 || || ||||| ||||||||||||||||| ||||| ||||| || |||||||||||||| Sbjct 898 TTCTAACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATC 957 Query 171977 TTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGT 172036 ||| |||||| ||| ||||| ||||| || || | ||| || || ||||| || || Sbjct 958 TTGAATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGT 1017 Query 172037 TTTACCAGTTAATGTTTTAATGAATATCTGCATTTT----ATTATAAAAA 172082 ||| || ||||||||||| | || || |||||||| | |||||||| Sbjct 1018 TTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTTCGTAAGTATAAAAA 1067 >seq1573 Length=3361 Score = 84.2 bits (92), Expect = 4e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 109121 TAAAATATTTACATAAAATAAAAATAGTACATTGTGATTTAAAACCAGAGAATATATTA 109179 || ||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||| Sbjct 1154 TAGAATATTTACATAAAATAAATATAGTACATAGAGATTTAAAACCAGAAAATATATTA 1096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905071656144600