Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_021311.1 Length=76479 Score E Sequences producing significant alignments: (Bits) Value seq4231 315 3e-81 >seq4231 Length=1411 Score = 315 bits (348), Expect = 3e-81 Identities = 478/676 (71%), Gaps = 11/676 (2%) Strand=Plus/Plus Query 66672 GACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCG 66731 ||||| |||||||||||||| | || |||||| ||| |||||| ||| || | ||| Sbjct 720 GACGTGATTCCCACCGGCTCCCTGGCGCTGGACATCGCGCTGGGCTGCGGCGGTTTGCCG 779 Query 66732 AGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTC 66791 | || || | || || || ||||| || || || || || ||| | || ||| ||| Sbjct 780 CGTGGTCGCATCGTCGAGATTTACGGGCCGGAGTCCTCGGGCAAGACGACGCTGACTCTG 839 Query 66792 CACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCAC 66851 | | | ||| | ||||||||| |||| ||| || || | | | || || ||||| Sbjct 840 GAGGTCATCGCCCAGGCGCAGAAGACCGGCGGCGTGGCGGCTTTCGTGGATGCCGAGCAT 899 Query 66852 TCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTT 66911 |||||||||| | || ||| || | |||| ||| |||||||| | || ||||| Sbjct 900 GCCCTGGACCCGGTCTATGCCGAGAAGATCGGAGTGAACCTCGACGATCTGCTGGTGTCC 959 Query 66912 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 66971 |||||||| || ||||||||||| ||||| |||| ||| | || || || |||| Sbjct 960 CAGCCGGATACCGGCGAGCAGGCGCTGGAAATCGCGGACGTGCTGGTGCGTTCCGGCGGC 1019 Query 66972 CTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGC 67031 || | |||| || | ||||| |||||||| ||| ||| ||||| ||||||||| Sbjct 1020 GTGGACGTCGTGGTGATCGACTCGGTGGCGGCGCTGACGCCCAAGGCCGAACTCGAAGGC 1079 Query 67032 GACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGCGCAAG 67091 || || || || ||| | || ||||| || | || ||||| |||||| |||||||| Sbjct 1080 GAGATGGGCGATTCGCACATGGGTCTGCAGGCCAGACTGATGTCGCAGGCCTTGCGCAAG 1139 Query 67092 CTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAG 67151 || |||| || |||| || ||||||| ||| | ||| |||| ||| | ||| | Sbjct 1140 CTGACCGCCAACATCAAGCGCTCCAACACCCTGGTGATCTTCATCAATCAGATCCGCATG 1199 Query 67152 AAGATCGGCAACGTGGGCTACGGC---CCGAATGAGACCACCACGGGCGGCAAGGCTTTG 67208 |||||||| |||| | |||| ||| ||||||||||| ||||| || || | Sbjct 1200 AAGATCGG---CGTGATGTTCGGCAATCCG---GAGACCACCACCGGCGGTAACGCGCTC 1253 Query 67209 AGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGA-GAAGGAAGGCGA 67267 | |||||||||||| || || |||| |||| || ||| ||| ||| | ||||| Sbjct 1254 AAGTTCTACGCCTCGGTGCGGCTGGACATCCGCCG-TTCGGGGGCGATCAAGAACGGCGA 1312 Query 67268 TGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCA 67327 |||| |||| ||| ||||| || |||||||| ||||||||| |||| |||||| Sbjct 1313 CGAGGTGATCGGGAACGAAACCCGCGTCAAGGTCGTGAAGAACAAGGTGGCTCCGCCGTT 1372 Query 67328 CCGCAACGCCGAGTTC 67343 ||||| |||||| ||| Sbjct 1373 CCGCACCGCCGACTTC 1388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244591046143080