Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq5662 123 3e-23 seq2168 87.8 2e-12 >seq5662 Length=7040 Score = 123 bits (136), Expect = 3e-23 Identities = 271/404 (67%), Gaps = 14/404 (3%) Strand=Plus/Minus Query 165952 TAAGGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAACA 166011 ||||||||||||| | ||| ||| |||||||||| | | ||| | ||||| ||| Sbjct 3573 TAAGGTTGCTCAACTTGTTGGTTATATTGCAGAACATAGTGCATATCATCATGGAGAATC 3514 Query 166012 AAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 166071 | ||| ||||||| || || | || ||| ||||||||| ||||||| ||| Sbjct 3513 ATCATTACAACAAACTATTATAAATATGGCTCAAACATTTGTTGGTTCAAATAACATAAA 3454 Query 166072 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCTGC 166131 || | ||||| ||| |||||||||| ||| |||||| ||||||||| | |||| Sbjct 3453 TTTTTTAGAACCATGTGGACAATTTGGTAGTAGAAAAGAAGGTGGTAAAGATGCATCTGC 3394 Query 166132 ATCAAGATATATTTATACCAAAC-CACATAAAATATTAAAATATATATTTAGAGAAGAAG 166190 | | || ||||| | ||| |||| ||| | | || || |||||||| ||| | | Sbjct 3393 AGCTAGGTATATATTTACAAAACTTGCATCATCCACTAGAA-GTATATTTAATGAATATG 3335 Query 166191 ATGACCCTATTTTAAATTAT---ACTGTTGAGGG---------TGAACCTATTCATTTTA 166238 |||| || |||||||| ||| | || || || ||||| ||| || Sbjct 3334 ATGATCCGATTTTAAAATATTTAAATGAAGAAGGACAAAAAATCGAACCACAATATTATA 3275 Query 166239 TTCCAGTAATCCCATTAATTTTAATTAATGGTTCTATTGGTATTGGAACAGGATGGTCAT 166298 | ||||| || ||| ||| || | ||||| | | || || ||||| |||| |||| Sbjct 3274 TACCAGTTATTCCAACGATTCTAGTAAATGGATGTGAAGGAATAGGAACTGGATATTCAT 3215 Query 166299 GTTTTATACCTCAATATAATCCTTTAGAATTAATTGATGCTATT 166342 ||||| || | |||||| | ||| ||||| || |||| Sbjct 3214 CATTTATTCCAAATTATAATTATAAAGATATAATTAATAATATT 3171 >seq2168 Length=13317 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 193843 TGTTATACTGGTTATAACCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGA 193902 |||||||| || ||||| |||||||| ||| | ||| | ||| || |||||||||| || Sbjct 7871 TGTTATACAGGATATAATCAAGAAGATAGTTTAATTATGAATCAATCTTCTATTGATCGA 7930 Query 193903 GGATTATTTGGTACTATAACTTATAATACATATACAGTTGAAGAAA 193948 ||||||||| | | | || |||| ||||||||| |||||||| Sbjct 7931 GGATTATTTAGAAGTGTATTTTATCGTACATATACTAGTGAAGAAA 7976 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 194586 TAAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAAT 194645 |||||| |||||||| ||||| | ||| || | | ||||| ||||| | |||||||| Sbjct 8974 TAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTAGAAGATAAAAT 9033 Query 194646 GCATGCTAGAAGTCATGGGCAAGTAACTA-CTTTACATCGACAACCAAATTGTGGTCGTT 194704 |||||||||||| || | |||||| ||||| | ||||||| || | | Sbjct 9034 ACATGCTAGAAGTAGAGGACCTTTAACTATGATTACA-AGGCAACCAACAGAAGGAAGAT 9092 Query 194705 CTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTG 194764 | || ||| ||| | |||||||| ||||||||| ||| ||||| || ||||| Sbjct 9093 CAAGAGATGGTGGTCTTAGATTTGGTGAAATGGAACGAGATTGTATGATATCTCATGGAT 9152 Query 194765 CTACTCAATTCTTAAATGAA 194784 || || || | ||||| ||| Sbjct 9153 CTGCTAAAATGTTAAAAGAA 9172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632444637895560