Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_022066.1 Length=108297 Score E Sequences producing significant alignments: (Bits) Value seq2129 113 3e-20 >seq2129 Length=3310 Score = 113 bits (124), Expect = 3e-20 Identities = 172/245 (70%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 95407 TCCATCTCCACGGTGAGCCACCGCAGCGTCTTAACCGCCTCGTCGGGCTCGGTGACCACC 95466 |||||||| || | ||| |||| || || | ||||| | |||||||||||| Sbjct 699 TCCATCTCGGCGACGCACCAGCGCAACGCATTGGCGGCCTCCTTCATGTCGGTGACCACC 758 Query 95467 GGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACCATCTTCGGGTCGATC 95526 ||| || || |||||||| || | ||| | ||||||| |||||| ||||||||| Sbjct 759 GGCGTCAGCAGATGGGGGATGCCTTCGTAAACTGAAAGTTCCAGCATCTTGGGGTCGATC 818 Query 95527 ATGATGAGCTTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAAACCAGCATCGAGTTG 95586 ||||| ||| ||| | |||| ||| ||| | | | | | |||| |||| Sbjct 819 ATGATCAGCCGGACGTCAGCAGGCCCGGCCTTGTACAAGAGGCTCAGAATCATCACGTTG 878 Query 95587 ATGAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGGTGGGGCATTTTGGCC 95646 ||| | || |||||||||||||||| ||| || ||||| || || ||||| |||||| Sbjct 879 ATGGCGACCGATTTGCCCGATCCGGTGGTGCCGGCGACCAGGAGATGCGGCATCTTGGCC 938 Query 95647 AGGTT 95651 ||||| Sbjct 939 AGGTT 943 Score = 100 bits (110), Expect = 2e-16 Identities = 134/186 (72%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 95166 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 95225 ||| | ||||| ||||| ||||| |||| |||||||| ||||||||||| || ||||| Sbjct 359 CGGAATGTTGGCCTTGATGAGGCCGGTGATCACATCCACCGAGGGCCGCTGGGTGGCCAG 418 Query 95226 GACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 95285 || ||||| | || || || ||||||||||| || | ||| | || |||| | Sbjct 419 GATCAGATGCAGCCCCGCGGCACGCGCCTTCTGCGCCAGCCGGGCGATCAGCTCCTCCA- 477 Query 95286 TTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTA 95345 | |||||| || |||||| | ||| || |||||||||| || | |||||| | Sbjct 478 --CCTTCTTGCCTACGATCATCATCATGTCGGCCAGTTCGTCGATGACGATGACGATGCA 535 Query 95346 GGGGAG 95351 ||| || Sbjct 536 GGGCAG 541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346401589133406