Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq3903 203 5e-47 >seq3903 Length=1754 Score = 203 bits (224), Expect = 5e-47 Identities = 327/469 (70%), Gaps = 6/469 (1%) Strand=Plus/Minus Query 35438 TCACGCTTTCGGACGGGTCACACCCGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTA 35497 ||| || || || |||| ||||| ||||||||||||||||| |||| ||| || || Sbjct 1308 TCAAGCCTTGGGCAGGGTGACACCGGTCTGGCCCTGGTATTTGCCGCTGCGGTCGCGATA 1249 Query 35498 CGAGATTTCGCAGTCCTCGTCACTCTCGAAAAACAGCATCTGCGCCACACCTTCGTTCGC 35557 || |||| ||| | ||||| ||| |||| | ||| || || |||||||| || Sbjct 1248 GGAAGTTTCACAGACGTCGTCGGCGCCGAGGAACAATACCTGGGCAACGCCTTCGTTAGC 1189 Query 35558 GTACACACGCGCCGGCAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCA 35617 ||| | |||||||||| || |||||| |||||||| ||||| || || ||||| Sbjct 1188 GTAGATCTTCGCCGGCAGGGGCGTGGTGTTGGAAAACTCCAGGGTCACGTGCCCCTCCCA 1129 Query 35618 CTCAGGTTCCAGCGGCGTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACC 35677 || || ||||| ||||| || ||||||||||| || ||||| || ||||| ||||| Sbjct 1128 TTCCGGCTCCAGGGGCGTGACATTGACGATGATGCCGCAGCGGGCATAGGTCGATTTACC 1069 Query 35678 CAAACACACCACGAGGACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGC 35737 || || | ||||||| ||| || || |||||||| || || || || ||||| || Sbjct 1068 CAGGCAGATGGTCAGGACGTCGCGGGGGATACGGAAGTACTCCACGGTCCGAGCCAGCGC 1009 Query 35738 GAAGCTGTTCGGCGGAATCAGGATGCTGTCAGCCTTAACCGGCT---GCAGGCACTTGGG 35794 ||| || |||||||| ||||| | || ||| | | | || || | Sbjct 1008 GAATGAATTGGGCGGAAT---GATGCACACGTCCGAGACCAGGTCGACGAAGCTGTTCTG 952 Query 35795 ATCGAAGTTCTTCGGATCAACCACTGCGCTGTTGATGTTGGTGAAGACTTCCCACTCATC 35854 |||||| ||||| ||||| || | || |||||||||||||| | | | || | Sbjct 951 ATCGAAATTCTTGGGATCGACGATGGCCGAATTGATGTTGGTGAATATCTTGAATTCGTT 892 Query 35855 GGCAGCACGCACGTCATAACCATACGACGAGTTGCCGTACGAGATAACG 35903 || | || ||||| || ||||| |||| ||||||| ||||| ||| Sbjct 891 GGAACAGCGGACGTCGTAGCCATAACTCGAGGTGCCGTAGGAGATGACG 843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 825858087639480