Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3998 102 1e-15 >seq3998 Length=1043 Score = 102 bits (112), Expect = 1e-15 Identities = 212/311 (68%), Gaps = 5/311 (2%) Strand=Plus/Plus Query 2175076 TGCCGTCGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGT 2175135 ||||||||||| |||| || || || ||||| | | |||| |||| |||| ||| |||| Sbjct 198 TGCCGTCGGTGGCGTTCTTGAATCCAACCGGACATGACAGCCCCGATGCCAGTTCACGGT 257 Query 2175136 GCACCTGGCTCTCGGTGGTGCGCGCGCCCACGGCGCCCCACGCCACGAGGTCTGCCAAAT 2175195 | ||||||||| ||||| || || || | ||||||||| || | ||||| | | || Sbjct 258 GAGACTGGCTCTCCGTGGTACGAGCACCGATGGCGCCCCAAGCGATCAGGTCGGAGACAT 317 Query 2175196 AGGGCGCCACCAAAGGGCTGAGAAACTCGACAGCCACGGGCTGGCCGACGTCGACGACCA 2175255 | ||| | | ||| ||||| ||| ||||| ||| | || || || Sbjct 318 ACTGCGGGGTGATGAGATCGAGGTACTCGGTGGCCGCGGGCATGCCCA-GT--TCGTTCA 374 Query 2175256 GGTCGCGCAGCAGTCGACGCGATGTGGCG-AGGCCGGCGGCCAGGCGGCACGACCCGTCG 2175314 | ||| ||| ||| || | | |||| | ||| | | | | | | |||| Sbjct 375 GATCGAGCAACAGCTTGCG-GGCGAGGCGCAAGCCTTTGTTGATGTTGAAACTCTCGTCC 433 Query 2175315 AGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAG 2175374 || ||||| || || |||||||||||| ||||||||||| |||||||| |||| |||| Sbjct 434 AGATCGGGATCATTGATCAGGCCCTTCCAGCCGACGGTCGTTCGCGGCTTCTCGAAATAG 493 Query 2175375 GCGCGCATGAC 2175385 | ||||| || Sbjct 494 ACCCGCATCAC 504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915641447871593