Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq214 232 1e-55 seq5639 185 1e-41 >seq214 Length=8422 Score = 232 bits (256), Expect = 1e-55 Identities = 188/228 (82%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || ||||||||||||| |||||||| || ||| |||||||||||| || Sbjct 6924 TGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCCG 6865 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| ||| |||||| ||| ||||||||| || || || ||||||| Sbjct 6864 ATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATCCCTCCTGATCAAC 6805 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| || ||||||||||| ||| |||||| || | |||||||||| Sbjct 6804 AAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAATA 6745 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| | |||||||| ||| ||||||||||||||| Sbjct 6744 TTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGGTA 6697 Score = 226 bits (250), Expect = 4e-54 Identities = 187/228 (82%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || ||||||||||||| |||||||| || ||| |||||||||||| || Sbjct 7152 TGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCCG 7093 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| ||| |||||| ||| |||||| || ||||| || || |||| Sbjct 7092 ATACTATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAGGGAATTCCTCCTGACCAAC 7033 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| || ||||||||||| ||| |||||| || | |||||||||| Sbjct 7032 AAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAATA 6973 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| | |||||||| ||| ||||||||||||||| Sbjct 6972 TTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGGTA 6925 Score = 206 bits (228), Expect = 4e-48 Identities = 182/227 (80%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || ||||||||||||| ||||| || || ||| |||||||||||| || Sbjct 6696 TGCAGATTTTTGTAAAAACATTAACTGGAAAGACTATAACTCTTGATGTAGAACCATCCG 6637 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| ||| |||||| ||| ||||||||| ||||| || || |||| Sbjct 6636 ATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATTCCTCCTGACCAAC 6577 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| || ||||||||||| ||| |||||| || | || ||||| | Sbjct 6576 AAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGACTATAACA 6517 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 | ||||||||||| || | ||| |||| ||| |||||||||||||| Sbjct 6516 TTCAAAAAGAATCAACCTTACATCTAGTTTTAAGATTAAGAGGAGGT 6470 Score = 206 bits (228), Expect = 4e-48 Identities = 168/204 (82%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 146056 CAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAATGTAAAAAATA 146115 |||||||||| || ||| |||||||||| | ||||||||| ||||||| ||| || Sbjct 7356 CAGGAAAAACTATAACTCTTGATGTAGAGCCATCTGATACTATTGAAAATGTTAAAGCTA 7297 Query 146116 AAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAAC 146175 |||| ||| ||||||||| ||||| || |||||||||||| | |||||||| || |||| Sbjct 7296 AAATTCAAGATAAAGAAGGAATTCCTCCTGATCAACAAAGATTAATTTTTGCTGGGAAAC 7237 Query 146176 AATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATT 146235 ||||||| ||| |||||| || | ||||||||||| ||||||||||| ||| | |||| Sbjct 7236 AATTAGAAGATGGTAGAACACTATCTGATTATAATATTCAAAAAGAATCAACTTTACATT 7177 Query 146236 TAGTATTACGATTAAGAGGAGGTA 146259 |||| ||| ||||||||||||||| Sbjct 7176 TAGTTTTAAGATTAAGAGGAGGTA 7153 >seq5639 Length=3794 Score = 185 bits (204), Expect = 1e-41 Identities = 168/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || ||||||||||||| ||||||||||| ||| ||||||| |||| | Sbjct 1049 TGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCTG 990 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| ||||||| ||| |||||| ||| ||||||||| ||||| || ||||||| Sbjct 989 ACACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATTCCTCCTGATCAAC 930 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| || ||||| ||||| ||| ||||| ||| | || ||||||| Sbjct 929 AAAGATTAATTTTTGCTGGAAAACAGTTAGAAGATGGCAGAACATTATCTGACTATAATA 870 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTA 146243 | |||||||| || || | ||||| ||| || Sbjct 869 TTCAAAAAGAGTCAACCTTACATTTGGTAATA 838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786110513396040