Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq2168 111 2e-19 seq5662 107 2e-18 seq362 107 2e-18 seq4090 91.5 2e-13 seq5588 84.2 3e-11 >seq2168 Length=13317 Score = 111 bits (122), Expect = 2e-19 Identities = 162/226 (72%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 192930 GAAACAGTATCTCATACATTAAATTATCCACAAAAACCCCTTGT---TACCACAGATATT 192986 || ||| || ||||| |||| | ||||| |||||||| | || ||| | || || Sbjct 7754 GATACATTAGCTCATTTATTATACTATCCTCAAAAACCATTAGTATGTACAAAAGCTACA 7813 Query 192987 GCAAAATTTAATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCT 193046 | || ||||| | || | |||| ||| ||| || ||||| ||||| || || Sbjct 7814 G-AATATTTAC--ATTTTAAAGATTTACCAGCTGGAATCAATGCAATTGTGGCAATTATG 7870 Query 193047 TGCTATACTGGTTATAATCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGA 193106 || ||||| || |||||||||||||| ||| | ||| | ||| || |||||||||| || Sbjct 7871 TGTTATACAGGATATAATCAAGAAGATAGTTTAATTATGAATCAATCTTCTATTGATCGA 7930 Query 193107 GGATTATTTGGTACTATAACTTATAATACATATACAGTTGAAGAAA 193152 ||||||||| | | | || |||| ||||||||| |||||||| Sbjct 7931 GGATTATTTAGAAGTGTATTTTATCGTACATATACTAGTGAAGAAA 7976 Score = 93.3 bits (102), Expect = 5e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 193790 TAAAATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAAT 193849 |||||| |||||||| ||||| | |||||| | | ||||||||||| | |||||||| Sbjct 8974 TAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTAGAAGATAAAAT 9033 Query 193850 GCATGCTAGAAGTCATGGACAAGTGACTA-CTTTACATCGACAACCAAATTGTGGTCGTT 193908 |||||||||||| |||| | |||| ||||| | ||||||| || | | Sbjct 9034 ACATGCTAGAAGTAGAGGACCTTTAACTATGATTACA-AGGCAACCAACAGAAGGAAGAT 9092 Query 193909 CTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTG 193968 | || ||| ||| | |||||||| |||||||| ||| ||||| || |||||| Sbjct 9093 CAAGAGATGGTGGTCTTAGATTTGGTGAAATGGAACGAGATTGTATGATATCTCATGGAT 9152 Query 193969 CTACTCAATTCTTGAATGAA 193988 || || || | || || ||| Sbjct 9153 CTGCTAAAATGTTAAAAGAA 9172 >seq5662 Length=7040 Score = 107 bits (118), Expect = 2e-18 Identities = 253/380 (67%), Gaps = 14/380 (4%) Strand=Plus/Minus Query 163000 TAAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACAGACTATAAACACGGTGAACA 163059 ||||||||||||| | ||| ||| |||| ||||| | | ||| | || || ||| Sbjct 3573 TAAGGTTGCTCAACTTGTTGGTTATATTGCAGAACATAGTGCATATCATCATGGAGAATC 3514 Query 163060 AAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 163119 | ||| ||||||| || || | || ||| ||||||||| ||||||| ||| Sbjct 3513 ATCATTACAACAAACTATTATAAATATGGCTCAAACATTTGTTGGTTCAAATAACATAAA 3454 Query 163120 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCGGC 163179 || | ||||| ||| |||||||||| ||| |||||| ||||||||| | | || Sbjct 3453 TTTTTTAGAACCATGTGGACAATTTGGTAGTAGAAAAGAAGGTGGTAAAGATGCATCTGC 3394 Query 163180 ATCAAGATATATTTATACCAAAC-CAAATAAAATATTAAAATATATATTTAGAGAAGAAG 163238 | | || ||||| | ||| |||| || | | || || |||||||| ||| | | Sbjct 3393 AGCTAGGTATATATTTACAAAACTTGCATCATCCACTAGAA-GTATATTTAATGAATATG 3335 Query 163239 ATGACCCTATTTTAAATTAT---ACTGTTGAGGG---------TGAACCTGTTCATTTTA 163286 |||| || |||||||| ||| | || || || ||||| ||| || Sbjct 3334 ATGATCCGATTTTAAAATATTTAAATGAAGAAGGACAAAAAATCGAACCACAATATTATA 3275 Query 163287 TCCCAGTGATTCCATTAATTTTAATTAATGGTTCTATTGGTATTGGAACAGGATGGTCAT 163346 | ||||| |||||| ||| || | ||||| | | || || ||||| |||| |||| Sbjct 3274 TACCAGTTATTCCAACGATTCTAGTAAATGGATGTGAAGGAATAGGAACTGGATATTCAT 3215 Query 163347 GTTTTATCCCTCAATATAAT 163366 ||||| || | |||||| Sbjct 3214 CATTTATTCCAAATTATAAT 3195 >seq362 Length=22319 Score = 107 bits (118), Expect = 2e-18 Identities = 394/607 (65%), Gaps = 25/607 (4%) Strand=Plus/Plus Query 168519 ATTCTTAAAGAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGAT 168578 ||| || ||||| | |||||| |||||| ||| ||| || ||| ||| || Sbjct 17145 ATTATTGAAGAATTATTATGGTTTATAAGAGGAGAAACAAATGGAAATACATTGTTAGAA 17204 Query 168579 ATAGGTGTTAAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATT-TATGTGGTTT 168637 | | ||| | | | ||| | | |||||| | | |||||||||||| || || Sbjct 17205 AAAAATGTAAGAATATGGGAAGCTAATGGAACAAGAGAATTTTTAGATAATAGAAAATTA 17264 Query 168638 TACCGAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGG 168697 | | | ||| ||| |||| | ||||| ||||||||||| |||||||||||| || Sbjct 17265 TTTC-ATAGAGAAGTTAATGATCTTGGTCCTATTTATGGATTCCAATGGAGACATTTTGG 17323 Query 168698 AGCTCAATATATTGA-CTG--TGATACAGATTACACCGGACAAGGAGTAGACCAATTAAG 168754 ||| |||||| || || ||||| |||| | | |||| || || ||| ||| Sbjct 17324 TGCTGAATATACAGATATGCATGATA---ATTATAAAGATAAAGGTGTTGATCAACTAAA 17380 Query 168755 TCAAACTATAAATACTTTACACAACAATCCGGAAAATAGAAGAATATTAATTAATAGT-- 168812 | | ||||||| | | || |||| | |||| || |||| || || || Sbjct 17381 AAATATTATAAATTTAATTAAAAATGATCCTACATGTAGACGA--ATTATTTTAT-GTGC 17437 Query 168813 -TGGGATGTACCACAACTTGATAAAATGGTTCTTCCCCCTTGTCACACTTTAGTGCAATT 168871 ||| ||||| | | | |||||||||| | || || ||||| | |||| ||||| Sbjct 17438 ATGGAATGTAAAAGATTTAGATAAAATGGCATTACCTCCATGTCATATTTTATGTCAATT 17497 Query 168872 TTATG----TAAGGAAAAAATCAATCTTAGATTGTCAGTTGTATCAAAGATCAGCTGATT 168927 ||||| | | | |||| | ||| | ||| ||||||||||||| ||||| Sbjct 17498 TTATGTTTTTGATGGAAAATT--ATCATGTATT-----ATGTATCAAAGATCTTGTGATT 17550 Query 168928 TAGGATTAGGAGTACCTTATAATATTGGATTTTATTCATTTTTAACACTTGTGCTAAGTA 168987 ||||| ||||||| || | ||| |||| | |||||| | || ||| | || || Sbjct 17551 TAGGACTAGGAGTTCCATTTAACATTGCTTCTTATTCTATATTTACATATATGATAGCAC 17610 Query 168988 AATGGTGTAATTTGACGCCTGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATT 169047 || ||||| || || | | ||||| ||| || || ||| ||| || ||| Sbjct 17611 AAGTATGTAACTTACAACCAGCTGAATTTATACATGTATTGGGTAATGCTCATGTTTATA 17670 Query 169048 CAAACCATGTTGAACCTTTAAAGGTTCAATTGAAAAGAAAACCATATTCTTTTCCAAATG 169107 || ||| ||||| ||||| |||| || || |||| || ||| |||| || | | Sbjct 17671 ATAATCATATTGAAAGCTTAAAAATTCAGTTAAATAGAACTCCTTATCCTTTCCCTACTC 17730 Query 169108 TTAAATT 169114 ||||||| Sbjct 17731 TTAAATT 17737 >seq4090 Length=18681 Score = 91.5 bits (100), Expect = 2e-13 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 193794 ATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCAT 193853 || ||||| || |||| |||||||| | |||||||||||| | |||||||| ||| Sbjct 14325 ATATTTATGGGTCCAATATATTATCAGAAATTAAAACATATGGTTCAAGATAAAATTCAT 14266 Query 193854 GCTAGAAGTC-ATGGACAAGTGACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCA 193912 |||||| || | || | || | | || ||| |||||||||| | ||||| || | Sbjct 14265 GCTAGATCTCGAGGGCCTAGACAATTATTAACA-CGACAACCAACTGAAGGTCGATCAAA 14207 Query 193913 AGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTG 193951 || ||||| |||||| |||| |||||||| | ||| || Sbjct 14206 AGAAGGAGGATTAAGACTTGGCGAAATGGAAAGAGATTG 14168 >seq5588 Length=13929 Score = 84.2 bits (92), Expect = 3e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 51856 AAAGACAATTGATGGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAG 51915 ||||||| ||| |||| ||| || || |||| ||| | |||||| || | |||||| Sbjct 8356 AAAGACATATGACTGATGAAGATTATATATTATTTAATCGACAACCATCATTACATAAAA 8297 Query 51916 CTTCTATGCAAAGTTTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAATTTGG 51975 ||| | ||||| |||||| || |||||| | ||||| | Sbjct 8296 TGAGTATTATGGGGCATAAAGCTAAAATATTGCCTTATTCTACATTTCGTTTAAATTTAG 8237 Query 51976 CTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTC 52035 || | ||| | |||||||||| ||||||||||| ||||||||||| |||||| | ||| Sbjct 8236 CTGTAACTTCACCATATAATGCCGATTTTGATGGTGATGAAATGAACTTACATTTAGCTC 8177 Query 52036 AATCATATGGAGCTACTGCTGAATTACAAGAATTAA 52071 ||||| ||| | | | ||||| || || | |||| Sbjct 8176 AATCACATGAAACCAGATCTGAAATAAAACATTTAA 8141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132446812360