Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq362 136 5e-27 seq5662 122 1e-22 seq2168 91.5 2e-13 seq4090 89.7 7e-13 seq1952 87.8 2e-12 >seq362 Length=22319 Score = 136 bits (150), Expect = 5e-27 Identities = 428/647 (66%), Gaps = 26/647 (4%) Strand=Plus/Plus Query 180357 AATTTGATTTAAGTGAAGGAATTGTACCACTTCTTACAACaaaaaaaaTAGTTTATAAAA 180416 ||||| |||||| | || ||| | ||| | | |||||||||||| || || | Sbjct 17086 AATTTAATTTAAATCAAT--ATTTT-CCATTATTAACAACAAAAAAATTATTTGTGCGAG 17142 Query 180417 ATATTCTTAAAGAATTATTATGGATAATGAAAGGTTTAACAAATTCTAAT---TTGTTAA 180473 |||| || |||||||||||||| | || | ||| ||||||| ||| |||||| Sbjct 17143 GTATTATTGAAGAATTATTATGGTTTATAAGAGGAGAAACAAATGGAAATACATTGTTAG 17202 Query 180474 ATGATATTGGTGTTAAAGTGTGGAATGATAATGGTTCGCGTAAGTTTTTAGATTCTTGTG 180533 | | | || | | | | ||| | | |||||| | | | ||||||||| | | Sbjct 17203 AAAAAAATG---TAAGAATATGGGAAGCTAATGGAACAAGAGAATTTTTAGATAATAGAA 17259 Query 180534 GATTTCATTT--TCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACA 180591 ||| |||| | || ||| |||| | || || ||||||||||| ||||||||||| Sbjct 17260 AATT--ATTTCATAGAGAAGTTAATGATCTTGGTCCTATTTATGGATTCCAATGGAGACA 17317 Query 180592 TGCAGGAGCTCAATATATTGACTGTG-ATACCAACTATATCGGGCAAGGTATAGACCAAT 180650 | || ||| |||||| || | || || || |||| | ||||| | || ||| Sbjct 17318 TTTTGGTGCTGAATATACAGA-TATGCATGATAATTATAAAGATAAAGGTGTTGATCAAC 17376 Query 180651 TAAGCCAAGTTATAGAAACTATAAAAAATAATCCCGAATGCCGAAGAATAATCATAGATA 180710 ||| | ||||| | || |||||| |||| ||| || |||| || || | Sbjct 17377 TAAAAAATATTATAAATTTAATTAAAAATGATCCTACATGTAGACGAATTATTTTATGTG 17436 Query 180711 GTTGGAATGTATCACAATTACCAGATATGGCTCTTCCACCATGTCACTGTTTGGTACAAT 180770 ||||||||| | | ||| | ||||| | || |||||||| ||| |||| Sbjct 17437 CATGGAATGTAAAAGATTTAGATAAAATGGCATTACCTCCATGTCATATTTTATGTCAAT 17496 Query 180771 TTTATGTTAGAAATA-AAATTTATTTAG-ATTGCCAATTGTATCAAAGATCTGCAGATTT 180828 |||||||| || ||| |||| | ||| |||||||||||||| ||||| Sbjct 17497 TTTATGTTTTTGATGGAAAATTATCATGTATTA-----TGTATCAAAGATCTTGTGATTT 17551 Query 180829 AGGATTAGGTGTACCATATAATATTGCTTTCTATTC-AT-TTTTGGTATGTGTTCTCTCA 180886 |||| |||| || |||| ||| ||||||| ||||| || ||| ||| || | | | Sbjct 17552 AGGACTAGGAGTTCCATTTAACATTGCTTCTTATTCTATATTTACATATATGATAGCAC- 17610 Query 180887 AAGTGGTGCAATTTAACCCCTGGAAAATTTATTCACACTTTTGGGGATGTTCATGTATAT 180946 |||| || || ||| || | ||||||| || || || ||| |||||| ||| Sbjct 17611 AAGT-ATGTAACTTACAACCAGCTGAATTTATACATGTATTGGGTAATGCTCATGTTTAT 17669 Query 180947 TCTAACCATATTGACCAATTAAAAATTCAATTAAGCAGAAACCCTTA 180993 ||| |||||||| ||||||||||| |||| |||| ||||| Sbjct 17670 AATAATCATATTGAAAGCTTAAAAATTCAGTTAAATAGAACTCCTTA 17716 >seq5662 Length=7040 Score = 122 bits (134), Expect = 1e-22 Identities = 257/380 (68%), Gaps = 14/380 (4%) Strand=Plus/Minus Query 172888 TAAGGTTGCTCAGTTGAGTGGTTACATTGCAGAACAAACTGATTATAAACATGGTGAACA 172947 |||||||||||| | |||||| ||||||||||| | || ||| | ||||| ||| Sbjct 3573 TAAGGTTGCTCAACTTGTTGGTTATATTGCAGAACATAGTGCATATCATCATGGAGAATC 3514 Query 172948 AAACCTTTGTGAAACTATAATAAAATTTGCACAGGATTTTGTAGGTACAAATAACATAAC 173007 | | ||||||| ||||| | || || ||||| ||| |||||||||||| Sbjct 3513 ATCATTACAACAAACTATTATAAATATGGCTCAAACATTTGTTGGTTCAAATAACATAAA 3454 Query 173008 ATTACTTGAACCAGATGGTCAGTTTGGTACTAGACTTGAAGGAGGTAAAGATTCAGCCGC 173067 || | |||||| ||| || ||||||| |||| ||||| ||||||||| || | || Sbjct 3453 TTTTTTAGAACCATGTGGACAATTTGGTAGTAGAAAAGAAGGTGGTAAAGATGCATCTGC 3394 Query 173068 ATCAAGGTATATTTATACTAAACC-GCATAAAATTTTAAAATATATATTTAGAGAAGAAG 173126 | | |||||||| | ||| |||| |||| | || || |||||||| ||| | | Sbjct 3393 AGCTAGGTATATATTTACAAAACTTGCATCATCCACTAGAAG-TATATTTAATGAATATG 3335 Query 173127 ATGACCCTATTTTAAT---TTTTACTCCGGAAGGAGAA-----CCAACCAC----TTTTG 173174 |||| || ||||||| ||| | | |||||| || | |||||| || | Sbjct 3334 ATGATCCGATTTTAAAATATTTAAATGAAGAAGGACAAAAAATCGAACCACAATATTATA 3275 Query 173175 TTCCCGTGATCCCTCTTATATTAATTAATGGTTCAATTGGTATAGGAACTGGATGGTCGT 173234 | || || || || || || | ||||| | || ||||||||||||| || | Sbjct 3274 TACCAGTTATTCCAACGATTCTAGTAAATGGATGTGAAGGAATAGGAACTGGATATTCAT 3215 Query 173235 GTTTTATTCCTCAATATAAT 173254 |||||||| | |||||| Sbjct 3214 CATTTATTCCAAATTATAAT 3195 >seq2168 Length=13317 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/171 (73%), Gaps = 8/171 (5%) Strand=Plus/Plus Query 201075 TTAAATTATCCTCAAAAACCACTTGT---TACAACTGACATTGCAGAAT-TTAATGGTCT 201130 ||| | ||||||||||||||| | || ||||| | | |||||| || | | | Sbjct 7772 TTATACTATCCTCAAAAACCATTAGTATGTACAAAAGCTA---CAGAATATTTACATTTT 7828 Query 201131 AAATGAATACCCCAATGGTATTAATGCAATTGTAGCAATTGCATGTTACACTGGATACAA 201190 ||| || | || ||| || ||||||||||| |||||| ||||| || ||||| || Sbjct 7829 AAA-GATTTACCAGCTGGAATCAATGCAATTGTGGCAATTATGTGTTATACAGGATATAA 7887 Query 201191 TCAAGAAGATAGTGTTATTCTTAATAAAGCATCTATTGAAAGAGGTTTATT 201241 ||||||||||||| | ||| | ||| || | |||||||| |||| ||||| Sbjct 7888 TCAAGAAGATAGTTTAATTATGAATCAATCTTCTATTGATCGAGGATTATT 7938 Score = 89.7 bits (98), Expect = 7e-13 Identities = 121/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 201917 TAAAATTTTTATAGGCCCAACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAAT 201976 |||||| |||||||| ||||||| ||||| | | ||||||||||| | |||||||| Sbjct 8974 TAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTAGAAGATAAAAT 9033 Query 201977 GCATGCGAGAAGTCATGGTCAAGTAAC-AACATTACATCGTCAACCAAACTGTGGTCGGT 202035 ||||| |||||| || | |||| | |||||| | ||||||| || | | Sbjct 9034 ACATGCTAGAAGTAGAGGACCTTTAACTATGATTACA-AGGCAACCAACAGAAGGAAGAT 9092 Query 202036 CCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGTAT 202081 | || |||||| | |||||||| ||||||||| ||||||||| Sbjct 9093 CAAGAGATGGTGGTCTTAGATTTGGTGAAATGGAACGAGATTGTAT 9138 >seq4090 Length=18681 Score = 89.7 bits (98), Expect = 7e-13 Identities = 120/161 (75%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 201921 ATTTTTATAGGCCCAACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCAT 201980 || ||||| || |||| ||| ||||| | |||||||||||| | |||||||| ||| Sbjct 14325 ATATTTATGGGTCCAATATATTATCAGAAATTAAAACATATGGTTCAAGATAAAATTCAT 14266 Query 201981 GCGAGAAGTC-ATGGTCAAGTAACAA-CATTACATCGTCAACCAAACTG-TGGTCGGTCC 202037 || ||| || | || | || |||| |||| || ||||| ||||| ||||| || Sbjct 14265 GCTAGATCTCGAGGGCCTAG--ACAATTATTAACACGACAACC-AACTGAAGGTCGATCA 14209 Query 202038 CAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTG 202078 ||| || ||||||||| |||| |||||||||| |||||| Sbjct 14208 AAAGAAGGAGGATTAAGACTTGGCGAAATGGAAAGAGATTG 14168 >seq1952 Length=27227 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/235 (69%), Gaps = 12/235 (5%) Strand=Plus/Minus Query 52921 TCAACTTGATATTGGAGACATAGTCAAAAGACAACTAAGAAATGGAGATTGGGTTCTATT 52980 ||||||| | |||||||| ||||| ||||||| | | |||||||| || |||| Sbjct 5552 TCAACTTAAAATTGGAGATATAGTAGAAAGACATATTTGTGATGGAGATATTGTATTATT 5493 Query 52981 AAATCGTCAACCAACATTACATAAACCTTCCATG-CAAGCATTTATCGTA--GTTA---T 53034 ||| | ||||| | |||||| | | ||| | | || | || || | || | Sbjct 5492 TAATAGACAACCCTCTTTACAT----CGT--ATGTCTATTATGTGTCATAAAGCTAGAGT 5439 Query 53035 TATTGATGGTAAAACTTTAAGGATGAATTTAGCTATGGCTAAAGCTTACAATGCAGATTT 53094 ||| ||| |||||| || | | ||| | | | || |||| ||||||||||| Sbjct 5438 TATGGATTATAAAACATTTCGTTTTAATGAATGTGTTTGTAGCCCTTATAATGCAGATTT 5379 Query 53095 TGATGGAGATGAAATGAATTTACATATTCCTCAGTCTTATGAAGCTACTGCAGAA 53149 ||||||||||||||||||||||||| | ||||| || | ||| ||| |||||| Sbjct 5378 TGATGGAGATGAAATGAATTTACATGTACCTCAAACTGAAGAATCTAGAGCAGAA 5324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655233417783000