Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq2168 107 2e-18 seq5588 87.8 2e-12 >seq2168 Length=13317 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 192493 CTCATACATTAAATTATCCACAAAAACCACTTGT---TACCACAGATATTGCAAAATTTA 192549 ||||| |||| | ||||| ||||||||| | || ||| | || || | || ||||| Sbjct 7764 CTCATTTATTATACTATCCTCAAAAACCATTAGTATGTACAAAAGCTACAG-AATATTTA 7822 Query 192550 ATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTG 192609 | || | |||| ||| ||| || ||||| ||||| || || || ||||| | Sbjct 7823 C--ATTTTAAAGATTTACCAGCTGGAATCAATGCAATTGTGGCAATTATGTGTTATACAG 7880 Query 192610 GCTATAACCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTTG 192669 | ||||| |||||||| ||| | ||| | ||| || |||||||||| ||||||||||| Sbjct 7881 GATATAATCAAGAAGATAGTTTAATTATGAATCAATCTTCTATTGATCGAGGATTATTTA 7940 Query 192670 GCACTATAACTTATAATACATATACAGTTGAAGAAA 192705 | | | || |||| ||||||||| |||||||| Sbjct 7941 GAAGTGTATTTTATCGTACATATACTAGTGAAGAAA 7976 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/200 (70%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 193343 TAAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAAT 193402 |||||| |||||||| ||||| | ||| || | | ||||| ||||| | |||||||| Sbjct 8974 TAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTAGAAGATAAAAT 9033 Query 193403 GCATGCTAGAAGTCATGGGCAAGTGACTA-CTTTACATCGACAACCAAATTGTGGTCGTT 193461 |||||||||||| || | | |||| ||||| | ||||||| || | | Sbjct 9034 ACATGCTAGAAGTAGAGGACCTTTAACTATGATTACA-AGGCAACCAACAGAAGGAAGAT 9092 Query 193462 CTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTG 193521 | || ||| ||| | |||||||| ||||||||| ||| ||||| || ||||| Sbjct 9093 CAAGAGATGGTGGTCTTAGATTTGGTGAAATGGAACGAGATTGTATGATATCTCATGGAT 9152 Query 193522 CTACTCAATTCTTAAATGAA 193541 || || || | ||||| ||| Sbjct 9153 CTGCTAAAATGTTAAAAGAA 9172 >seq5588 Length=13929 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 50306 AAAGACAATTGATAGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAG 50365 ||||||| ||| |||| ||| || || |||| ||| | |||||| || | |||||| Sbjct 8356 AAAGACATATGACTGATGAAGATTATATATTATTTAATCGACAACCATCATTACATAAAA 8297 Query 50366 CTTCTATGCAAAGTTTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAATTTAG 50425 ||| | ||||| |||||| || |||||| | ||||||| Sbjct 8296 TGAGTATTATGGGGCATAAAGCTAAAATATTGCCTTATTCTACATTTCGTTTAAATTTAG 8237 Query 50426 CTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTC 50485 || | ||| | |||||||||| ||||||||||| ||||||||||| |||||| | ||| Sbjct 8236 CTGTAACTTCACCATATAATGCCGATTTTGATGGTGATGAAATGAACTTACATTTAGCTC 8177 Query 50486 AATCATATGGAGCTACTGCTGAATTACAAGAATTAA 50521 ||||| ||| | | | ||||| || || | |||| Sbjct 8176 AATCACATGAAACCAGATCTGAAATAAAACATTTAA 8141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628486519288320