Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_023700.1 Length=34553 Score E Sequences producing significant alignments: (Bits) Value seq2106 179 8e-41 >seq2106 Length=2500 Score = 179 bits (198), Expect = 8e-41 Identities = 353/512 (69%), Gaps = 19/512 (4%) Strand=Plus/Plus Query 13551 AGGCCGCCATTGAGTACCTGGAGCGCAAGGGATTCGCCATTACCTGGAACTGGCACGA-- 13608 ||||||| || | ||||| ||| |||||| | | |||||||||||||||| || Sbjct 1708 AGGCCGCGATCGCCTACCTCCAGCACAAGGGCTACAAGCTTACCTGGAACTGGCAGGAGA 1767 Query 13609 TGTTG-ACGCGGCCACCCATGCCCGAGCGCTGACGGTGGCCAAGGCGGCACGCCTGGACG 13667 || || ||| ||| || || || || | || | || ||| |||| || ||| ||| Sbjct 1768 TGCTGGACGATGCC---CACGCACGGGCCTTTACCATTGCGAAGSCGGCGCGGCTG-ACG 1823 Query 13668 TGCTCCAGGACATCCGCGACGCCCTGGTCGATAACCTGGAGCGTGGCGGAACGCTGCGCG 13727 || | |||||||| || | ||||| | || || | ||| |||||| | Sbjct 1824 TGGTGCAGGACATTCGGAATGCCCTYGACGTCGCGCTCCGCCACGGCCAAACGCTCAAGG 1883 Query 13728 ACTTCCAGCGCAACCTGCGGCCGATCCTGGAGGCCAAGGGCTGGTGGGGGCGTCAGATAG 13787 ||||||| ||| || ||| | ||| | ||||||||||||||||| ||||| Sbjct 1884 ACTTCCAAAAAAACTTGAAGCCCACGCTGCAAGCCAAGGGCTGGTGGGGCAAACAGATCA 1943 Query 13788 TGGTTGCGCCGGACGGCGGG---GCCGAGGTCGCCCAGCTCGGCAGCCCGCGCCGGCTGG 13844 | |||| ||| || |||| |||||||||||| ||| |||||||| | ||||||| Sbjct 1944 TCGTTGA--CGG-CGCCGGGAWTSCCGAGGTCGCCCSGCTGGGCAGCCCATGGCGGCTGG 2000 Query 13845 AAACGATCTACCAGACCAACGTGCAGTCGGCCTACATGGCCGGGCGCTATGCCGCCGCAT 13904 || ||||||| ||| ||| |||| || |||| |||||| |||| | || || Sbjct 2001 CTACRATCTACCGGACGAACCTGCAATCCGCCTTCATGGC--GGCGAATTACCAAGAAAT 2058 Query 13905 --ACGAGGCCAGGGAAACTCACCCTTACTGGATGTATGTGGCCGTCATGGACAGCGTCAC 13962 ||| |||| ||| | ||||| || ||| || || || || ||||| || ||| Sbjct 2059 GGCCGAAGCCACGGACAGCCACCCCTATTGGCAATACGTCGCGGTGCTGGACGGCCGCAC 2118 Query 13963 CCGGCCCAGCCATGCGGCGCTACATGGCAAGGTGTTCCGCTGGGACGACCCGATCTGGCA 14022 |||||||||||| ||| | | ||| ||||||||| ||||| || |||||| | Sbjct 2119 CCGGCCCAGCCACCGGGCCATGAACGGCCGAGTGTTCCGCCATGACGATCCCATCTGG-A 2177 Query 14023 GCAC-ATCATGCCGCCGAATGGCTACAACTGC 14053 ||| ||| |||||| ||||||| ||||||| Sbjct 2178 ACACGATCTGGCCGCCCAATGGCTTCAACTGC 2209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 110440541101410