Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_024330.1 Length=37380 Score E Sequences producing significant alignments: (Bits) Value seq2106 196 1e-45 >seq2106 Length=2500 Score = 196 bits (216), Expect = 1e-45 Identities = 355/510 (70%), Gaps = 15/510 (3%) Strand=Plus/Plus Query 15660 AGGCCGCCATCGAGTACCTGGAGCGCAAGGGGTTCGCCATTACCTGGAACTGGCACGA-- 15717 ||||||| |||| ||||| ||| |||||| | | |||||||||||||||| || Sbjct 1708 AGGCCGCGATCGCCTACCTCCAGCACAAGGGCTACAAGCTTACCTGGAACTGGCAGGAGA 1767 Query 15718 TGTTG-ACGCGGCCACCCATGCCCGAGCGCTGACGGTGGCCAAGGCGGCACGCCTGGACG 15776 || || ||| ||| || || || || | || | || ||| |||| || ||| ||| Sbjct 1768 TGCTGGACGATGCC---CACGCACGGGCCTTTACCATTGCGAAGSCGGCGCGGCTG-ACG 1823 Query 15777 TGCTCCAGGACATCCGCGACGCCCTGGTCGATAACCTGGAACGTGGCGGAACGCTGCGCG 15836 || | |||||||| || | ||||| | || || | ||| |||||| | Sbjct 1824 TGGTGCAGGACATTCGGAATGCCCTYGACGTCGCGCTCCGCCACGGCCAAACGCTCAAGG 1883 Query 15837 ACTTCCAGCGCAACCTGCGGCCGATCCTGGAGGCCAAGGGCTGGTGGGGGCGTCAGATAG 15896 ||||||| ||| || ||| | ||| | ||||||||||||||||| ||||| Sbjct 1884 ACTTCCAAAAAAACTTGAAGCCCACGCTGCAAGCCAAGGGCTGGTGGGGCAAACAGATCA 1943 Query 15897 TGGTTG-CGCCGGACGGTGGCGCCGAGGTCGCCCAGCTCGGCAGCCCGCGCCGGCTGGAA 15955 | |||| || || ||| |||||||||||| ||| |||||||| | ||||||| Sbjct 1944 TCGTTGACGGCGC-CGGGAWTSCCGAGGTCGCCCSGCTGGGCAGCCCATGGCGGCTGGCT 2002 Query 15956 ACGATCTATCAGACCAACATGCAATCGGCCTACATGGCCGGGCGCTATGCCGCCGCATA- 16014 || ||||| | ||| ||| ||||||| |||| |||||| |||| | || || Sbjct 2003 ACRATCTACCGGACGAACCTGCAATCCGCCTTCATGGC--GGCGAATTACCAAGAAATGG 2060 Query 16015 -CGAGGCCAGGGAAACCCACCCCTACTGGATGTATGTGGCCGTCATGGACAGCGTCACCC 16073 ||| |||| ||| | ||||||||| ||| || || || || ||||| || ||||| Sbjct 2061 CCGAAGCCACGGACAGCCACCCCTATTGGCAATACGTCGCGGTGCTGGACGGCCGCACCC 2120 Query 16074 GGCCCAGCCATGCGGCGCTACATGGCAAGGTGTTCCGCTGGGACGACCCGATCTGGCAAC 16133 |||||||||| ||| | | ||| ||||||||| ||||| || |||||| ||| Sbjct 2121 GGCCCAGCCACCGGGCCATGAACGGCCGAGTGTTCCGCCATGACGATCCCATCTGG-AAC 2179 Query 16134 AC-ATCATGCCGCCGAATGGCTACAACTGC 16162 || ||| |||||| ||||||| ||||||| Sbjct 2180 ACGATCTGGCCGCCCAATGGCTTCAACTGC 2209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119486330169748