Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq214 109 1e-18 seq5639 87.8 3e-12 >seq214 Length=8422 Score = 109 bits (120), Expect = 1e-18 Identities = 102/132 (77%), Gaps = 11/132 (8%) Strand=Plus/Plus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| || || ||||||||||||||||| ||||||| |||||||| ||| Sbjct 6733 ATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAA 6792 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 | |||| |||||||||| | ||| | ||| |||| ||||||||||| || ||||| | || Sbjct 6793 AAATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTATCTTGAATTTTAGCTTTAACAT 6852 Query 81760 TTTCAATCGTAT 81771 ||||||| |||| Sbjct 6853 TTTCAATAGTAT 6864 Score = 109 bits (120), Expect = 1e-18 Identities = 102/132 (77%), Gaps = 11/132 (8%) Strand=Plus/Plus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| || || ||||||||||||||||| ||||||| |||||||| ||| Sbjct 7189 ATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAA 7248 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 | |||| |||||||||| | ||| | ||| |||| ||||||||||| || ||||| | || Sbjct 7249 AAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTAGCTTTAACAT 7308 Query 81760 TTTCAATCGTAT 81771 ||||||| |||| Sbjct 7309 TTTCAATAGTAT 7320 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/132 (75%), Gaps = 11/132 (8%) Strand=Plus/Plus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| || || || ||||| |||||||| ||||||| |||||||| ||| Sbjct 6505 ATTCTTTTTGAATGTTATAGTCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAA 6564 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 | |||| ||||||||| | ||| | ||| |||| ||||||||||| || ||||| | || Sbjct 6565 AAATTAATCTTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGAATTTTAGCTTTAACAT 6624 Query 81760 TTTCAATCGTAT 81771 ||||||| |||| Sbjct 6625 TTTCAATAGTAT 6636 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/132 (75%), Gaps = 11/132 (8%) Strand=Plus/Plus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| || || ||||||||||||||||| ||||||| |||||||| ||| Sbjct 6961 ATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAA 7020 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 | |||| ||||||||| | ||| | ||| | || |||||||| || || ||||| | || Sbjct 7021 AAATTAATCTTTGTTGGTCAGGAGGAATTCCCTCTTTATCTTGGATTTTAGCTTTAACAT 7080 Query 81760 TTTCAATCGTAT 81771 ||||||| |||| Sbjct 7081 TTTCAATAGTAT 7092 >seq5639 Length=3794 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/128 (74%), Gaps = 11/128 (9%) Strand=Plus/Plus Query 81653 TCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC-----------AAAG 81701 || || || |||||||| ||||||| ||||| | ||||||||| ||| Sbjct 860 TCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTCTAACTGTTTTCCAGCAAAA 919 Query 81702 ATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATATTT 81761 |||| |||||||||| | ||| | ||| |||| ||||||||||| || ||||| | |||| Sbjct 920 ATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTT 979 Query 81762 TCAATCGT 81769 ||||| || Sbjct 980 TCAATAGT 987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903346978756320