Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq8 300 4e-76 seq362 140 8e-28 seq1952 118 3e-21 seq5588 109 1e-18 seq1736 105 2e-17 >seq8 Length=6382 Score = 300 bits (332), Expect = 4e-76 Identities = 618/911 (68%), Gaps = 25/911 (3%) Strand=Plus/Minus Query 110263 TAAATAATATTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTC 110322 ||||||| || |||||||| | || | | | ||| |||||||| |||||||| Sbjct 5052 TAAATAAAGAAATAGATTATACAAGAGATTTTAACTATGATTATTTTGGATTCAAAACAT 4993 Query 110323 TTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGT 110382 | ||| | | |||||| | || | || | || ||||||||||| ||||| | | Sbjct 4992 TAGAAAGATCATATTTATTACGAATTAACAATAAAATTATTGAACGTCCACAACATTTAT 4933 Query 110383 TTCTTCGTGTTGCGATTGGTATTCATGGACATGATATT---AAAGCTGTTATTGAATGTT 110439 | | | || | ||||| || ||| | ||||| || |||||| ||| ||| | Sbjct 4932 TAATGAGAGTATCAATTGGAATACATATAGATGATCTTGAAAAAGCT-TTA--GAAACAT 4876 Query 110440 ATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAA 110499 || || || | | | || | | |||||||||||||| ||||||| |||||| Sbjct 4875 ATCATTTAATGTCTCAGAAATATTTCACACATGCTACTCCTACATTATTTAATTCAGGAA 4816 Query 110500 CTAATGGAGGACAATTGGCTTCTTGCTTTCT----TCTAGGAATTAACGATGATTCTATT 110555 | | |||| || | ||||||||||| |||| ||| | | |||||||| Sbjct 4815 CACCACGTCCACAAATGTCATCTTGCTTTCTATTATCTATGAAATCA----GATTCTATC 4760 Query 110556 GAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATT 110615 |||||||| | ||| | | ||| || |||| | ||| ||||| | | ||||| || Sbjct 4759 GAAGGTATATTTGAAACATTAAAACAATGTGCTTTAATTAGTAAAACCGCGGGAGGTATA 4700 Query 110616 GGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCT 110675 || || || || ||||| | | | | |||| | | | || ||| Sbjct 4699 GGAGTTGCTGTACAAGATATAAGAGGACAGAATTCTTATATTAGAGGAACTAATGGTATA 4640 Query 110676 TCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAA 110735 |||| ||| | ||||||||||||||||| || || || || || | |||||| ||||| Sbjct 4639 TCAAATGGTTTAGTTCCAATGTTAAGAGTTTTTAATGATACAGCTAGATATGTAGATCAA 4580 Query 110736 GGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATA 110792 ||||| || ||||| || || |||||| | ||| | ||||| |||||||| ||||| Sbjct 4579 GGTGGAGGAAAAAGAAAAGGTTCTTTTGCTGTATATATAGAACCATGGCATTCTGATATT 4520 Query 110793 TTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTA 110852 |||||||| ||||| | | |||||||| || |||||| |||||| | |||||| Sbjct 4519 TTTGAATTTTTAGATTTAAGAAAAAATCATGGTAAAGAAGAATTAAGAGCTAGAGATTTA 4460 Query 110853 TTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGG 110912 |||||||| || ||| | | |||||||| |||||| | || |||||||| | | ||| Sbjct 4459 TTTTATGCTATTTGGGTACCTGATTTATTTATGAAAAGAGTAAAAGAAAATAGAAATTGG 4400 Query 110913 TCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAA 110972 | || ||||||||| || | ||| || || ||| | || |||| |||||| Sbjct 4399 ACACTAATGTGTCCTAATGAATGTCCAGGGTTAAGTGAATCTTGGGGTGAAGAATTTGAA 4340 Query 110973 GACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAA---TTCCAGCTCAA 111029 | | || |||||||||| ||||| || || | ||| ||| ||| || ||| Sbjct 4339 AAATTATATACAAAATATGAAGAAGAA---AATTTAGGAAAAAAAACTGTTCTTGCACAA 4283 Query 111030 GAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTAT 111089 || | ||||| || | || ||| | |||||||| || ||||| || ||| Sbjct 4282 GATTTATGGTTTGCTATTTTACAAAGTCAAATAGAAACTGGTGTACCATATATGTTATAT 4223 Query 111090 AAAGAT-CATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAA 111148 |||||| ||| |||| ||||||||||||| ||||||||||||||||| | |||||| Sbjct 4222 AAAGATGCAT-GTAATTCTAAATCTAATCAAAAAAATTTAGGAACAATTAAATGTAGTAA 4164 Query 111149 TTTGTGCTGTG 111159 ||| || |||| Sbjct 4163 TTTATGTTGTG 4153 Score = 104 bits (114), Expect = 6e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 112581 ACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAATTCAA 112640 || ||| ||||||| | || || ||||||||||||| | || || |||||| || Sbjct 4033 ACTAAAATTATTACTAGAAATTTAGATAAAATTATTGAAAGAAATTATTACCCAATTAAA 3974 Query 112641 AAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGATTAGCT 112700 |||| || | || ||||| | ||| |||| ||||| || || |||||||||||||| Sbjct 3973 GAAGCTGAAAAATCAAATAAAAGACATCGACCTATTGGAATAGGAGTACAAGGATTAGCA 3914 Query 112701 GATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTAAATGAA 112760 || ||||||| | | || ||| | ||| ||||| |||||| |||||| || Sbjct 3913 GACACATTTATGCTTTTAAGATATCCATATGAATCTGATGAAGCTAAAGAATTAAATAAA 3854 Query 112761 AAGATTTTCGAAACAATCTATTTCGCTGCT 112790 | || || |||||||| |||| || ||| Sbjct 3853 AGAATATTTGAAACAATGTATTATGCAGCT 3824 >seq362 Length=22319 Score = 140 bits (154), Expect = 8e-28 Identities = 279/405 (69%), Gaps = 19/405 (5%) Strand=Plus/Minus Query 58937 ACATAAAATTGACATAAAATATGACAAGGAGGAAGTGCCATTTTATCAATATCACTTACA 58996 |||||||||||||||||||||||||| ||||| | |||||||||||| | ||| ||||| Sbjct 17503 ACATAAAATTGACATAAAATATGACATGGAGGTAATGCCATTTTATCTAAATCTTTTACA 17444 Query 58997 TTCCATGCACTGAAAATAATGCGACGAGAATGAGGGTCATTTTTAATAAGTTCTTCACAA 59056 |||||||||| |||||||| || | | | ||| ||||||||||| | | | | | Sbjct 17443 TTCCATGCACATAAAATAATTCGTCTACATGTAGGATCATTTTTAATTAAATTTATAATA 17384 Query 59057 TGTTTTATTTGGTCAAATCCATTA---GTATATTCAGTATTGGCATCAATGTATTTATCT 59113 | ||||| ||| |||| || ||| |||| | | || ||| | |||| | | Sbjct 17383 TTTTTTAGTTGATCAACACCTTTATCTTTATAATTATCATGCATATCTGTATATTCAGCA 17324 Query 59114 CCCCAATAACGCCATTGAAAACCATATACAGGTCCAAGAGTTCCTTCAGGATATTCATTT 59173 || ||| | |||||| || ||||| | ||| |||||| || || | | || | Sbjct 17323 CCAAAATGTCTCCATTGGAATCCATAAATAGGACCAAGA--TCATTAA--CTTCTCTATG 17268 Query 59174 AAACCA----CGAGAGTCAAGAAATTCTCTTGTTGAATTACCATCCCAAATATGAACATT 59229 ||| | | | || | ||||||||||||| |||| | ||||| || ||||| Sbjct 17267 AAATAATTTTCTATTATCTAAAAATTCTCTTGTTCCATTAGCTTCCCATATTCTTACATT 17208 Query 59230 ATTATCATTAAGAGATTTATT---ATCTGTTTTTCCAGATAGAAACCATAACAATTCCTT 59286 || || ||| | || |||| || ||||| ||| || ||||||||| ||||| | Sbjct 17207 TTTTTC--TAACA-ATGTATTTCCATTTGTTTCTCCTCTTATAAACCATAATAATTCTTC 17151 Query 59287 AATGCAAATTTTC-CAAGCAACtttttttGTTGTAAGCATTGGAA 59330 ||| | | | ||| || |||||||||||| | | ||||| Sbjct 17150 AATAATACCTCGCACAAATAA-TTTTTTTGTTGTTAATAATGGAA 17107 >seq1952 Length=27227 Score = 118 bits (130), Expect = 3e-21 Identities = 119/154 (77%), Gaps = 8/154 (5%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||||| ||||| || | ||| |||||||| ||| |||||||| | ||| Sbjct 5494 TTTAATAGACAACCCTCTTTACATCGTATGTCTATTATGTGTCATAAAGCTAGAGT---- 5439 Query 305396 TCTGGATTG----ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTT 305451 | |||||| |||||||| || |||| | ||| ||||| ||||||||||| ||||| Sbjct 5438 TATGGATTATAAAACATTTCGTTTTAATGAATGTGTTTGTAGCCCTTATAATGCAGATTT 5379 Query 305452 TGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||||||||||||||||||| | |||||||||||| Sbjct 5378 TGATGGAGATGAAATGAATTTACATGTACCTCAA 5345 >seq5588 Length=13929 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||| ||| ||| | |||| | | || ||| | ||||||||| | ||||||||| Sbjct 8354 AGACATATGACTGATGAAGATTATATATTATTTAATCGACAACCATCATTACATAAAATG 8295 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 ||| |||| ||||||| ||| |||| || | |||||||| |||||| || | Sbjct 8294 AGTATTATGGGGCATAAAGCTAAAATATTGCCTTATTCTACATTTCGTTTAAATTTAGCT 8235 Query 305426 GCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 | | | || |||||||| ||||||||||| ||||||||||| | ||| || ||||| Sbjct 8234 GTAACTTCACCATATAATGCCGATTTTGATGGTGATGAAATGAACTTACATTTAGCTCAA 8175 Query 305486 TCA 305488 ||| Sbjct 8174 TCA 8172 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 306249 ATAGAACATTACCATTATTTAGTAAATTTGATAATGGTTTAGATGCTCGTGGATTCATAT 306308 ||||| |||||||| |||| ||||||||| |||| ||| | | ||||| ||| Sbjct 7054 ATAGATCATTACCACATTTTATCAAATTTGATTATGGCCCAGAAAGTAGAGGATTTGTAT 6995 Query 306309 CAAGTTC--ATTTAAACAAGGACTATCTCCTTCTGAATACTTCTTTCATGCAATTAGCGG 306366 ||| ||| |||||| || || | || ||| ||| |||||||| || | || Sbjct 6994 CAAATTCTTATTTAAGT--GGGTTAACACCACAAGAAGTCTTTTTTCATGCTATGGGAGG 6937 Query 306367 ACGTGACGGTGTTATTGATACTGCTTGTAAGACAGCAAGTATTGGTTATCTCCAAAGAAA 306426 | || ||| ||||||||||||||||||| ||| || | ||||||| | ||||||| Sbjct 6936 TAGAGAAGGTATTATTGATACTGCTTGTAAAACATCAGAAACTGGTTATATACAAAGAAG 6877 Query 306427 ATTAATGAAAACGCTTGAAGAT 306448 |||||| ||| | | |||||| Sbjct 6876 ATTAATTAAAGCTATGGAAGAT 6855 >seq1736 Length=6654 Score = 105 bits (116), Expect = 2e-17 Identities = 141/191 (74%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 167202 AATATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCG 167261 || |||| ||| |||||| | | | | || || |||| | | | || |||||||| Sbjct 4249 AAAATTTGAAATGAGCACATGAGAGTCTCATCAACACTCATCATAGCTCCTGCATTATCA 4308 Query 167262 AATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAA 167320 ||||| | | || |||||||| |||||||||| ||||||||||| | || ||| || Sbjct 4309 AATTC-TCCACAATAATTTGGAGCTGAAAATAAAGTAACTAATTGTCTTTTTGCAAAAAA 4367 Query 167321 TTCATAACCATCTTCAACAACTTCATGGGCACGTATTACAAGTTCAA-CTCCTAtttttt 167379 |||||| |||||||| ||||||| |||||| | || ||| |||| || | |||| | Sbjct 4368 TTCATATCCATCTTCTACAACTTGATGGGCTCTACATATAAGATCAAGTTCATGTTTTCT 4427 Query 167380 tAAGAAAATTA 167390 ||| ||||||| Sbjct 4428 TAA-AAAATTA 4437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186726323256207