Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_025431.1 Length=45718 Score E Sequences producing significant alignments: (Bits) Value seq3865 208 2e-49 >seq3865 Length=1228 Score = 208 bits (230), Expect = 2e-49 Identities = 383/557 (69%), Gaps = 6/557 (1%) Strand=Plus/Minus Query 7915 CGCTTCGCGACGGTTCTGGCTGATCCTCCTTGGCGCTTTCAGAACAGCACAGGCAAAGTT 7974 || ||| |||| | || || ||||| || |||| ||||||||| |||| |||||| | Sbjct 893 CGTTTCAGGACGATCCTCGCCGATCCGCCGTGGCAGTTTCAGAACCGCACGGGCAAAATG 834 Query 7975 GCACCAGAGCACCGTCGCCTTAGCCGCTATGGCACGTTGTCGCTTCCAGAGA-TCGAGGC 8033 || || |||||| ||||| | ||| || |||||| || || || || | ||| || Sbjct 833 GCGCCGGAGCACAAGCGCCTGAACCGTTACGGCACGATGA-GCCTCGAGGCAATCGCGGG 775 Query 8034 GTTGCCAGTTG--CGGAGATCGTAAAAGAGCCATCTCATCTTTATCTATGGGTACCGAAC 8091 || || || | ||| | || | | || | || || ||||| ||||| ||||| Sbjct 774 ATTACCGGTGGAGCGGCTAACGGCCGACA--CAGCGCACCTGTATCTGTGGGTGCCGAAT 717 Query 8092 GCCCTCCTGGCGGAAGGACTGTCCGTGATGGCGGCGTGGGGCTTCACATACAAATCGAAC 8151 ||||| ||| ||| || ||| || |||| ||| ||||| ||||| ||||| | || Sbjct 716 GCCCTGCTGCTGGAGGGCCTGAAGGTCATGGAGGCCTGGGGATTCACCTACAAGACCAAT 657 Query 8152 ATCGTGTGGCACAAAATCCGCAAAGACGGCGGGTCAGACGGTCGCGGCGTCGGCTTTTAT 8211 |||| |||||||| |||||||||||||| || | || || || |||||||| |||||| Sbjct 656 CTCGTCTGGCACAAGATCCGCAAAGACGGTGGTCCGGATGGCCGAGGCGTCGGATTTTAT 597 Query 8212 TTCCGGAATGTGACCGAGATTATCCTGTTTGGGACAAAGGGAAAAAACGCCAGAACACTC 8271 |||||||| || || ||| | | ||||| || || ||||| || | || || Sbjct 596 TTCCGGAACGTCACGGAGCTGGTGCTGTTCGGCGTGCGCGGGAAAAATGCGCGTACTCTG 537 Query 8272 GCACCCGGTCGCACCCAAGTGAACTACATCTCTTCGCAGAAGCGGGAGCACTCACGCAAA 8331 || | || || ||| ||||| | | | || | | |||||| || ||||| ||||| Sbjct 536 GCGGCGGGCCGTCGCCAGGTGAATTTCTTGGCTACCCGGAAGCGCGAACACTCGCGCAAG 477 Query 8332 CCAGATGAACTTTATCCAATCATCGAAGCGTGTTCGTCAGGCCCGTATCTGGAACTTTTT 8391 || ||||| | || |||||||| |||| | || |||||||||||||| || Sbjct 476 CCCGATGAGATGTACGGCATCATCGAGTCGTGCAGTCCGGGACCGTATCTGGAACTGTTC 417 Query 8392 GGTCGCGGTATTAGAAAGGGGTGGGCGACTTGGGGCAATCAAGCGGACGAAAGTTATCGT 8451 | || ||| | | ||||| || ||||| || | |||||||||| ||| Sbjct 416 GCACGAGGTGCGCGGGATCGGTGGTCGGTGTGGGGTAACGAGGCGGACGAAAACTATTAC 357 Query 8452 CCGAACTGGCCCACCTA 8468 |||| ||| |||||| Sbjct 356 CCGAGATGGAACACCTA 340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146166128277920