Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq5639 102 8e-17 seq214 98.7 9e-16 >seq5639 Length=3794 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTC 131973 |||||||||| | |||||||||||||||| || ||||| | | ||| | || | ||||| Sbjct 842 ACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCA-TCTTC 900 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | |||||| || | | | |||| | |||||||| ||||| || ||||||||||| Sbjct 901 TAACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTG 960 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| ||| | | ||| | ||| || | || || || || | || | ||||| Sbjct 961 AATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTT 1020 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || | ||||||| || || ||||| Sbjct 1021 TCCGGTTAATGTTTTTACAAAGATTTGCAT 1050 >seq214 Length=8422 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCT 131971 ||||| | ||||| | |||| |||||||||||||| ||||| | || | |||| Sbjct 6486 AAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAGTGTTCTACCATCT 6545 Query 131972 TCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCG 132031 || | ||||| || | | | |||| | ||||| || ||||| || ||||||||||| Sbjct 6546 TCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCTTCTTTATCT 6605 Query 132032 GTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTT 132091 |||||| ||| | | ||| | |||||||| || || || || | || | || Sbjct 6606 TGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATAGTC 6665 Query 132092 TTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||| | ||||||| ||||||||||| Sbjct 6666 TTTCCAGTTAATGTTTTTACAAAAATCTGCAT 6697 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCT 131971 ||||| ||||||| |||| ||||||||||| || || || | || | |||| Sbjct 6714 AAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCT 6773 Query 131972 TCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCG 132031 || | ||||| || | | | |||| | |||||||| ||||| || ||||||||||| Sbjct 6774 TCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTATCT 6833 Query 132032 GTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTT 132091 |||||| ||| | | ||| | |||||||| || || || || | || | ||| Sbjct 6834 TGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTT 6893 Query 132092 TTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||| | ||||||| ||||||||||| Sbjct 6894 TTTCCAGTTAATGTTTTTACAAAAATCTGCAT 6925 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCT 131971 ||||| ||||||| |||| ||||||||||| || || || | || | |||| Sbjct 6942 AAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCT 7001 Query 131972 TCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCG 132031 || | ||||| || | | | |||| | ||||| || ||||| || || |||||||| Sbjct 7002 TCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCCTCTTTATCT 7061 Query 132032 GTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTT 132091 ||||| ||| | | ||| | |||||||| || || || || | || | ||| Sbjct 7062 TGGATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTT 7121 Query 132092 TTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||| | ||||||| ||||||||||| Sbjct 7122 TTTCCAGTTAATGTTTTTACAAAAATCTGCAT 7153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476577318901320