Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_026242.1 Length=145704 Score E Sequences producing significant alignments: (Bits) Value seq5508 100 3e-16 seq3933 84.2 2e-11 >seq5508 Length=2743 Score = 100 bits (110), Expect = 3e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 39761 CATAACGTAACTATCAGGCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGA 39820 |||| |||| || | ||||| ||||||||||||||||| || ||| ||||||||||| Sbjct 2137 CATAGTGTAAATAATAAGCGGGCATGGTCTAGTGGTTATGACGCCTGCTTTACACGCAGG 2196 Query 39821 AGGTCCCGGGTTCAATCCCCGGTGCCCGTATTT 39853 || ||||| |||| |||| |||||||||||||| Sbjct 2197 AGATCCCGAGTTCGATCCTCGGTGCCCGTATTT 2229 >seq3933 Length=11680 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| || ||| | |||||||| || ||||| |||| ||| Sbjct 1345 GCGGGCATGGTCTAGTGGCTATGACGCCTGCCTAACACGCAGGAGATCCCGAGTTCGATC 1404 Query 39838 CCCGGTGCCCGTATTT 39853 | |||||||||||||| Sbjct 1405 CTCGGTGCCCGTATTT 1420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466091664353280